PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G284200.1
Common NamePHAVU_003G284200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 377aa    MW: 39672.2 Da    PI: 7.0205
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G284200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-0887111126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt+lC+ f++ GtC+y  +C+FaH+
  Phvul.003G284200.1  87 FKTKLCCKFRA-GTCPYITNCNFAHS 111
                         69*********.*************8 PP
2zf-CCCH18.53.5e-06162187126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         yk + C+ f+    C+yGd+C+F H+
  Phvul.003G284200.1 162 YKGRHCKKFYTEEGCPYGDSCTFLHD 187
                         77888********************7 PP
3zf-CCCH42.88.6e-14255280126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt++C+ +  tG+C++G++C+FaHg
  Phvul.003G284200.1 255 WKTRICNKWEMTGYCPFGNKCHFAHG 280
                         8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.9E-1484119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-884117IPR000571Zinc finger, CCCH-type
SMARTSM003560.003586112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8486113IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-587111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-9159189IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-7160189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098161189IPR000571Zinc finger, CCCH-type
SMARTSM003560.086161188IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-16251284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-10252285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.309254282IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-9254281IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10255280IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDYARDGNVV QIITGGGGGG ESWSGDQADW ATEDEYRFWN NNNNNGDAES TPSNSNYESR  60
SEPPSKKSRN SQDGSSNRSK AIGKMFFKTK LCCKFRAGTC PYITNCNFAH SIEELRRPPP  120
NWQEIVAAHE EEKAVMVEPR EEFQIPTVGS STFAGDTMQR SYKGRHCKKF YTEEGCPYGD  180
SCTFLHDEQS KNRESVAISL GPGGYAGGGG GGSGNGGGGG GGGGSGNGGG GGGGGGGSGV  240
ANAAGNGANS KPSNWKTRIC NKWEMTGYCP FGNKCHFAHG ATELHRYGGG LMEGESRDGG  300
SVVGSDTSKG AASKASADNV VAAVTPVAHS DVYHIGVPSQ RPSSIVIQRP GQRTHQKWKG  360
PDKISRIYGD WIDDIE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224237SGNGGGGGGGGGGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G284200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156415.10.0hypothetical protein PHAVU_003G284200g
RefseqXP_007156416.10.0hypothetical protein PHAVU_003G284200g
SwissprotQ9LQM31e-126C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLV7CGK70.0V7CGK7_PHAVU; Uncharacterized protein
STRINGXP_007156415.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-127C3H family protein