PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G250700.1 | ||||||||
Common Name | PHAVU_003G250700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | LBD | ||||||||
Protein Properties | Length: 177aa MW: 19620.4 Da PI: 6.8898 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 111 | 8.3e-35 | 3 | 102 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aCk++rr+C +dC +apyfpae+ ++fa++h++FG nv+++lk+++ e r+ ++++l+y+Aear+rdPv+G+vgvi + ++ l+ lk Phvul.003G250700.1 3 PCGACKYQRRRCRADCLMAPYFPAESIQRFAYIHHVFGGGNVSNILKSTKLELRKWTARALTYQAEARVRDPVHGCVGVICEQEESLRILK 93 7****************************************************************************************** PP DUF260 92 aelallkee 100 ++l+++k+e Phvul.003G250700.1 94 EKLEKAKRE 102 ***999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.508 | 2 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-33 | 3 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MTPCGACKYQ RRRCRADCLM APYFPAESIQ RFAYIHHVFG GGNVSNILKS TKLELRKWTA 60 RALTYQAEAR VRDPVHGCVG VICEQEESLR ILKEKLEKAK REVAQNVGPE VMQKMIEQCS 120 SDSHANMVDL EAPLAITVDD ADLSSWDPFS AWEPAFSRLQ PPQGGDAKGE TIVPPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-26 | 3 | 103 | 11 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-26 | 3 | 103 | 11 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G250700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007156006.1 | 1e-131 | hypothetical protein PHAVU_003G250700g | ||||
TrEMBL | V7CFE9 | 1e-129 | V7CFE9_PHAVU; Uncharacterized protein | ||||
STRING | XP_007156006.1 | 1e-130 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19459 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 6e-35 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G250700.1 |
Entrez Gene | 18635995 |