PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G244400.1 | ||||||||
Common Name | PHAVU_003G244400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | B3 | ||||||||
Protein Properties | Length: 484aa MW: 54958.6 Da PI: 7.9484 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.8 | 2.3e-19 | 122 | 212 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k l++s+v + + lp +f+++h + +++t++lede g++++ k+ +++vl++GW++F +++L+egD vvF+l++ ++f Phvul.003G244400.1 122 FVKSLIRSHVASCFGMGLPVSFCKRHLPD--KDTTIILEDEYGKEYNTKF--I--ACKMVLSAGWRQFSAEHKLQEGDAVVFQLVEPTKF- 205 89************************534..5679***************..4..45589***********************9876666. PP .EEEEE-S CS B3 92 lvvkvfrk 99 ++ ++r+ Phvul.003G244400.1 206 -KIYIIRA 212 .8887775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-22 | 114 | 213 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-23 | 117 | 213 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.13E-27 | 120 | 211 | No hit | No description |
Pfam | PF02362 | 4.2E-17 | 122 | 212 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.113 | 122 | 213 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.1E-24 | 122 | 213 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MVVIDERNRD RANRRDVVEF PQYDQAVTVA YYGEELHGGV PLPHSSRMSP LNMDKQNKVV 60 ENKYKRLNNN QTKQATPAEA QKFSSSMKAA VEGTSSRGEV MSSAVLQAEE VQSNLRPEFP 120 SFVKSLIRSH VASCFGMGLP VSFCKRHLPD KDTTIILEDE YGKEYNTKFI ACKMVLSAGW 180 RQFSAEHKLQ EGDAVVFQLV EPTKFKIYII RANNTRELDG AFLNLDSCTK QKMGGKDSTD 240 TDVVTCNSSK RKHGKSVPLD IQKKKKANLS RLRPKAGPSV EQSENDSEEA LSEVVEEFKM 300 LEFEDMRGFE NFSIIVEGVS IDVEFPTEVR NKYYRLCCSQ HAFLHENLIK GMNYKLIAGI 360 ISETVNIADA IRVSVICTPR FEFANWDKTL LAFEHLGMNV EFLRIRLRRL VSIAYEKNDV 420 SEAKKYLAYR NEPSRADDEI RIMEVKLEEL KGACNGFGAY LGSLKGKAEN YQMKFRREVD 480 APW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 249 | 265 | KRKHGKSVPLDIQKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G244400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007155931.1 | 0.0 | hypothetical protein PHAVU_003G244400g | ||||
TrEMBL | V7CF75 | 0.0 | V7CF75_PHAVU; Uncharacterized protein | ||||
STRING | XP_007155931.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1007 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 4e-32 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G244400.1 |
Entrez Gene | 18635928 |