PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G221000.1
Common NamePHAVU_003G221000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 282aa    MW: 31363.3 Da    PI: 9.5115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G221000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00041527123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        +kC+ C++sF++   L  H++ H
  Phvul.003G221000.1  5 HKCKLCSRSFTNGRALGGHMKAH 27
                        79******************998 PP
2zf-C2H212.20.00055179201123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y C+ Cgk F+++  L +H   +
  Phvul.003G221000.1 179 YLCHTCGKAFRSSRALGSHRTIC 201
                         66*****************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.2E-7428IPR007087Zinc finger, C2H2
SuperFamilySSF576671.66E-7427No hitNo description
PROSITE profilePS5015710.97532IPR007087Zinc finger, C2H2
SMARTSM003550.028527IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576671.66E-7174199No hitNo description
PfamPF139120.0066179198IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.001179200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035566179199IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328179206IPR007087Zinc finger, C2H2
SuperFamilySSF576677.49E-5218243No hitNo description
PfamPF139123.7E-12219243IPR007087Zinc finger, C2H2
PROSITE profilePS501579.598220242IPR007087Zinc finger, C2H2
SMARTSM003550.2220242IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280222242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDNRHKCKLC SRSFTNGRAL GGHMKAHLAT LPLPPKPQTL THSSFTYSSS SDSEQEQLKE  60
QDSLSYALRE NPKKSFRVTD PEDRESETES KNPTRQRSKR NRKSAMLKLS FVVSTPLITA  120
EPEPVSSVSD TSPEEDVAMS LMMLSRDTWN VVPNAGPPQR SKRHCTGSET KLKKLRGKYL  180
CHTCGKAFRS SRALGSHRTI CCRQEQVQNQ NNNNNSIKVF ECPFCYKVFG SGQALGGHKR  240
SHLIPSSSST VNDSLKFKQT FIDLNMPAPP EEDDLSVVSD A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19499RQRSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G221000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155662.10.0hypothetical protein PHAVU_003G221000g
TrEMBLV7CFL50.0V7CFL5_PHAVU; Uncharacterized protein
STRINGXP_007155662.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-41C2H2-like zinc finger protein