PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G214300.1
Common NamePHAVU_003G214300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 320aa    MW: 35717.6 Da    PI: 6.416
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G214300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.68.8e-1663110148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+eEd++l++ +   G  +W+++++  g++R++k+c++rw +yl
  Phvul.003G214300.1  63 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 110
                         79********************************************97 PP
2Myb_DNA-binding53.17.2e-17119160447
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          T+ E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
  Phvul.003G214300.1 119 LTEAEEQLVIDLHARLGNR-WSKIAARLP-GRTDNEIKNHWNTH 160
                         699****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-2154112IPR009057Homeodomain-like
PROSITE profilePS5129414.02758110IPR017930Myb domain
SuperFamilySSF466894.49E-2760157IPR009057Homeodomain-like
SMARTSM007178.5E-1362112IPR001005SANT/Myb domain
PfamPF002491.1E-1463110IPR001005SANT/Myb domain
CDDcd001671.42E-865110No hitNo description
PROSITE profilePS5129427.764111165IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-25113165IPR009057Homeodomain-like
SMARTSM007172.7E-15115163IPR001005SANT/Myb domain
PfamPF002493.8E-15118160IPR001005SANT/Myb domain
CDDcd001673.36E-11120161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MILSHIYVIN NLGKKVRGLY IKVGGEWGFW VITHYKLVLL GSAVVCVSSM GRQPCCDKLG  60
VKKGPWTAEE DKKLINFILT NGQCCWRAVP KLAGLRRCGK SCRLRWTNYL RPDLKRGLLT  120
EAEEQLVIDL HARLGNRWSK IAARLPGRTD NEIKNHWNTH IKKKLLKMGV DPVTHEPLNK  180
QAASQDSSSS PSEHLPQPGN NLVQVKETDG VLNSEENSSS SQAENSSGDD SLLLESICSD  240
DSLLNTLWLD ETPLMEALWD TTPKLENTSS NMGSVPSWED NCGWLLDCQD FGIHDFGFNC  300
FNEIESKALQ ALEMKDEGH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28631657108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G214300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0988500.0BT098850.1 Soybean clone JCVI-FLGm-16B22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155582.10.0hypothetical protein PHAVU_003G214300g
SwissprotQ50EX61e-108ODO1_PETHY; Protein ODORANT1
TrEMBLV7CF900.0V7CF90_PHAVU; Uncharacterized protein
STRINGXP_007155582.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65334142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.17e-96myb domain protein 85
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]