PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G212800.1
Common NameDREB1F, PHAVU_003G212800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 294aa    MW: 32295 Da    PI: 5.0643
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G212800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.4e-18106157155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr++  +++Wv+e r+p   + k++r++lg++ t+e+Aa+a++ a+++l+g
  Phvul.003G212800.1 106 PVYRGVRQRN-NNKWVCEMRVP---NdKSTRIWLGTYPTPEMAARAHDVAALALRG 157
                         68*****999.8*********9...6678*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-13106157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-30107167IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-20107167IPR016177DNA-binding domain
SMARTSM003804.5E-26107171IPR001471AP2/ERF domain
PROSITE profilePS5103221.628107165IPR001471AP2/ERF domain
CDDcd000182.76E-28108167No hitNo description
PRINTSPR003671.9E-7108119IPR001471AP2/ERF domain
PRINTSPR003671.9E-7131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSTKSVVADN KNISISYFLL STVSENGFFN FTAQPNQSIA NVNPQMNLLK QSSDESNNGC  60
YVCSSPETSS SNPPNAVHSD EELHALASAR PKKRAGRRIF KETRHPVYRG VRQRNNNKWV  120
CEMRVPNDKS TRIWLGTYPT PEMAARAHDV AALALRGKSA CLNFADSAWR LPLPASTNAK  180
EIRRVAGEAV VAIAAEDSCV EQLENENVNA VADCEVSSSG LSIDEDGSSS KALRVFCDLD  240
EITIPDASGF EEMHAWLQSM ADKPLRSPTF VTYVRDWISV EDDAEVSLWS FSI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00001PBMTransfer from 471409Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G212800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX1513990.0KX151399.1 Phaseolus vulgaris genotype Jalo EEP558 DREB1F protein (DREB1F) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155567.10.0hypothetical protein PHAVU_003G212800g
TrEMBLV7CF760.0V7CF76_PHAVU; DREB1F protein
STRINGXP_007155567.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.13e-38ERF family protein