PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 471409 | ||||||||
Common Name | ARALYDRAFT_471409 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 22368 Da PI: 5.1459 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.6 | 4.2e-15 | 18 | 68 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 + y+G+r++ +Wv+e+r+p + +r++lg++ ta++Aa+a++ a ++l+g 471409 18 PVYRGIRRRN-GDKWVCEVREP-----ThqRRIWLGTYPTADMAARAHDVAVLALRG 68 68*****877.9*********8.....336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.4E-10 | 18 | 68 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-19 | 19 | 78 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-28 | 19 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-23 | 19 | 82 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.562 | 19 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.86E-25 | 20 | 78 | No hit | No description |
PRINTS | PR00367 | 3.0E-7 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-7 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0050826 | Biological Process | response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MRPKKRAGRR VFKETRHPVY RGIRRRNGDK WVCEVREPTH QRRIWLGTYP TADMAARAHD 60 VAVLALRGRS ACLNFADSAW QLPVPESNDP DVIRRVAAEA AEMFRPVDLG SGITVLPSLG 120 DDVDLGFGSG SGSGSGSEER NSSSYAFGDY EEVSTTMMRL AEEPLMSPPR SYTEDMTPSN 180 VYTEEEMCYE DISLWSYSY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00001 | PBM | 25378322 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 471409 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC025417 | 0.0 | AC025417.4 Genomic sequence for Arabidopsis thaliana BAC T12C24 from chromosome I, complete sequence. | |||
GenBank | AK228194 | 0.0 | AK228194.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-63-M15. | |||
GenBank | AY560892 | 0.0 | AY560892.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g12610) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020870917.1 | 1e-146 | dehydration-responsive element-binding protein 1F | ||||
Swissprot | Q9LN86 | 1e-131 | DRE1F_ARATH; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | D7KP85 | 1e-145 | D7KP85_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.1__1363__AT1G12610.1 | 1e-146 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM355 | 28 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12610.1 | 1e-124 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | 471409 |
Entrez Gene | 9328759 |
Publications ? help Back to Top | |||
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