PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G207900.1
Common NamePHAVU_003G207900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 486aa    MW: 52877.1 Da    PI: 4.6454
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G207900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.7e-10143165426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         e C f+++tG Ck+G +CkF+H+
  Phvul.003G207900.1 143 EDCAFYMKTGNCKFGFNCKFNHP 165
                         89********************8 PP
2zf-CCCH29.21.6e-09189211325
                         S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                         t +C++++r+G Ck+G +Ck++H
  Phvul.003G207900.1 189 TTECKYYQRSGGCKFGKSCKYNH 211
                         889******************** PP
3zf-CCCH41.62.1e-13237261226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++++C++++rtG Ck+G++CkF+H+
  Phvul.003G207900.1 237 GERECPYYMRTGSCKFGANCKFNHP 261
                         789*********************9 PP
4zf-CCCH29.41.4e-09372398127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++f++tG Ck+ ++CkF+H++
  Phvul.003G207900.1 372 PGEPECSYFLKTGDCKFKSNCKFHHPK 398
                         5799*********************96 PP
5zf-CCCH35.61.5e-11419443226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C++++r+G+Ck+G+ CkF H+
  Phvul.003G207900.1 419 DQSVCSHYSRYGICKFGPACKFDHP 443
                         5789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-5138167IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.211139167IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-8143165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-4145164IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-5186213IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389186214IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6188215IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-7189211IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-5189213IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6235262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.77235263IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-11237261IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6238262IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5241260IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4371398IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061371399IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-7373398IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5376400IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6415443IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4417444IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577417445IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-9419443IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4422443IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MEGSESDSAP LSISNGEDPQ LGASSPPPPP PPPSDLNHAV EHETLSGELQ SKLDLKGEDE  60
SEDKVSDLND GGGVCDEETA KGDGDSRGSE TNSWNEEVGV DVDVDADEDE DEDDVGVGDD  120
GVETKEERNS DMTHHYPLRP EAEDCAFYMK TGNCKFGFNC KFNHPIRRKT QAVKEKTGEG  180
EEPTDRSSTT ECKYYQRSGG CKFGKSCKYN HTRGKFSTTA PAPVFELNFL GLPIRQGERE  240
CPYYMRTGSC KFGANCKFNH PDPTAVGGCE PPSGFGNGGP ISLQGVARPS VPSWSSPRSL  300
NEASPFVPMM LSPTQGVSTQ SSDWNGYQAS VYLPERNMHP PSTFVLNNPA VDTNVYLHHQ  360
KQMSVEEFPE RPGEPECSYF LKTGDCKFKS NCKFHHPKNR IARLPPCNLS DKGLPLRPDQ  420
SVCSHYSRYG ICKFGPACKF DHPINLQPLM MSGLGDQSYS NSASVEVAGI GESTGETDAT  480
IQQSV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G207900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155512.10.0hypothetical protein PHAVU_003G207900g
SwissprotQ9STM41e-136C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLV7CF170.0V7CF17_PHAVU; Uncharacterized protein
STRINGXP_007155512.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-129C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]