PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G190400.1 | ||||||||
Common Name | PHAVU_003G190400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MYB | ||||||||
Protein Properties | Length: 311aa MW: 34674.4 Da PI: 6.3435 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.3 | 1.3e-16 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +++++G+g+W++++ g+ R+ k+c++rw +yl Phvul.003G190400.1 17 KGPWTPEEDIMLVSYIQEHGPGNWRSVPTNSGLIRCSKSCRLRWTNYL 64 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 2.8e-16 | 70 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E++++v++ ++lG++ W++Ia++++ Rt++++k++w+++l Phvul.003G190400.1 70 RGNFTEHEEKIIVHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 115 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 8 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.835 | 12 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.04E-30 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-13 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-15 | 17 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.34E-11 | 19 | 64 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-24 | 68 | 120 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.849 | 69 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 5.4E-16 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-14 | 70 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.68E-11 | 72 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MCEMGRSSCC DKIEIKKGPW TPEEDIMLVS YIQEHGPGNW RSVPTNSGLI RCSKSCRLRW 60 TNYLRPGIKR GNFTEHEEKI IVHLQALLGN RWAAIASYLP ERTDNDIKNY WNTHLKKKLK 120 LSDQSGNEEG VEQERHSSSS HPKGQWERRL QTDIQTAKQA LCDALSLHTT PATHAVPETI 180 PSSTSHPPYS QASSSYASSY ENISRLMENW MKTPSSNETN SLGGFSFSNT VNNTPRCSSS 240 EGAHSTTNTT CAQDNVFDLF TFSSSTNYGS PSQTQVPLTM IENWLFEDGS SQSQGDLMSM 300 SLEESTLGLF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-27 | 14 | 119 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G190400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007155313.1 | 0.0 | hypothetical protein PHAVU_003G190400g | ||||
Swissprot | P81392 | 1e-107 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | V7CAU5 | 0.0 | V7CAU5_PHAVU; Uncharacterized protein | ||||
STRING | XP_007155313.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1016 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47600.1 | 3e-97 | myb domain protein 94 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G190400.1 |
Entrez Gene | 18635382 |
Publications ? help Back to Top | |||
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