PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G182700.1 | ||||||||
Common Name | PHAVU_003G182700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 185aa MW: 21509.5 Da PI: 10.0635 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.5 | 7.1e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqv+fskRr g+lKKA E+SvLCda+va+++fs++gkl ++s+ Phvul.003G182700.1 9 KRIENKINRQVSFSKRRSGLLKKAREISVLCDADVALLVFSPKGKLLDFSN 59 79*********************************************9985 PP | |||||||
2 | K-box | 83 | 6.6e-28 | 82 | 163 | 8 | 89 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 + ++a +e++ e ++Lk+++e Lq+ qR+++Ge+L+sL+l+ Lq+LeqqL+++lk+iRs+Kn+ ++e+i++lqkk ke ++ Phvul.003G182700.1 82 AGDQAPNENWVMEQERLKDRVEALQQRQRNFMGEELHSLNLRGLQRLEQQLDSALKHIRSRKNQTMHESISKLQKKIKEKEK 163 45667789********************************************************************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.389 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.9E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.45E-36 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 9.55E-31 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.5E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.8E-21 | 86 | 163 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.683 | 88 | 184 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVS FSKRRSGLLK KAREISVLCD ADVALLVFSP KGKLLDFSNQ 60 PSVERILQRY ERHSYAERQD GAGDQAPNEN WVMEQERLKD RVEALQQRQR NFMGEELHSL 120 NLRGLQRLEQ QLDSALKHIR SRKNQTMHES ISKLQKKIKE KEKALGPEEH EVAKYQGCDF 180 CHCN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-16 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 1e-16 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 1e-16 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 1e-16 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 1e-16 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 1e-16 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 1e-16 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 1e-16 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G182700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031177 | 1e-147 | KT031177.1 Glycine max clone HN_CCL_28 MADS transcription factor (Glyma05g07380.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007155208.1 | 1e-133 | hypothetical protein PHAVU_003G182700g | ||||
Swissprot | Q6E6S7 | 5e-72 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | V7CAK1 | 1e-132 | V7CAK1_PHAVU; Uncharacterized protein | ||||
STRING | XP_007155208.1 | 1e-133 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF588 | 32 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 1e-65 | AGAMOUS-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G182700.1 |
Entrez Gene | 18635302 |
Publications ? help Back to Top | |||
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