PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G176800.1
Common NamePHAVU_003G176800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 310aa    MW: 33790.6 Da    PI: 8.0687
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G176800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.4e-09855447
                        S-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  4 WTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47
                        W+ eE++ + +a++++  +     +W++Ia+ ++  ++ +++k ++q +
  Phvul.003G176800.1  8 WSYEEEKAFENAIAMHWIEeaskeQWEKIASAVP-SKSMEEVKQHYQVL 55
                        *****************99***************.************86 PP
2Myb_DNA-binding38.92.1e-12135179347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  Phvul.003G176800.1 135 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 179
                         7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.836160IPR017884SANT domain
SMARTSM007172.8E-5458IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-5655IPR009057Homeodomain-like
SuperFamilySSF466892.73E-9862IPR009057Homeodomain-like
PfamPF002491.7E-6855IPR001005SANT/Myb domain
CDDcd001679.63E-8856No hitNo description
PROSITE profilePS5129416.873128184IPR017930Myb domain
SuperFamilySSF466897.9E-17130185IPR009057Homeodomain-like
SMARTSM007172.3E-10132182IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.4E-17132182IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.7E-11133178IPR009057Homeodomain-like
CDDcd001671.09E-9135180No hitNo description
PfamPF002497.7E-11135179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSSSGTLWSY EEEKAFENAI AMHWIEEASK EQWEKIASAV PSKSMEEVKQ HYQVLVEDVS  60
AIEAGHVPFP NYAYEETTSS NKDFHGSSKA TSSDKRSNCN YGSGFSGLGH DSTTHSSGKG  120
GLSRSSEQER RKGIPWTEEE HRLFLLGLDK FGKGDWRSIS RNFVISRTPT QVASHAQKYF  180
IRLNSMNRDR RRSSIHDITS VNNGDVASSQ APITGQHSST VSSSTMGVGQ SLKHRVQGHI  240
PPGLGMYGTP VGHPVAAPPG HMASAVGTPV MLPPGPHPHP HPHPHPHAHP HPPYVLPLAY  300
PMAPPPMHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-15481779RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G176800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312030.0KT031203.1 Glycine max clone HN_CCL_93 MYB/HD-like transcription factor (Glyma17g13010.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155139.10.0hypothetical protein PHAVU_003G176800g
SwissprotQ9FNN62e-86SRM1_ARATH; Transcription factor SRM1
TrEMBLV7CCQ90.0V7CCQ9_PHAVU; Uncharacterized protein
STRINGXP_007155139.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106943340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.15e-81MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]