PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G162600.1
Common NamePHAVU_003G162600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 345aa    MW: 38457.2 Da    PI: 8.1064
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G162600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-0884108126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt+ C  f+  G C+ G++C+FaHg
  Phvul.003G162600.1  84 FKTRMCAKFRI-GACRNGENCNFAHG 108
                         69*********.*************9 PP
2zf-CCCH28.42.9e-09144168125
                         --S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                         +k++lC+ ++ + +C+yGd+C+F H
  Phvul.003G162600.1 144 QKMKLCKKYYNGEECPYGDKCSFLH 168
                         5999*******66************ PP
3zf-CCCH421.5e-13227253127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +kt+lC  f  tG+C++Gd C+FaHg+
  Phvul.003G162600.1 227 WKTKLCIKFETTGHCPFGDDCHFAHGQ 253
                         8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.8E-1480116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-881114IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-483109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.21183110IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-684108IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4143170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.934143171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-7143170IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-7144168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-9145169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-16221257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-10225257IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6226253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.375226254IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-11227253IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSFSDHIPSF MMSPPSFSTD SDAIEVRLQF PMNNELLGPH SPQDQPPSFK RARIGDNNHS  60
YAMACPPRVT QNPGFNKGTS HIFFKTRMCA KFRIGACRNG ENCNFAHGVE DMRQPPPNWQ  120
DLVGLRNEER LPSGNWDDDQ KIIQKMKLCK KYYNGEECPY GDKCSFLHED PAKFRDDSGR  180
YRESTAISIG TNGSPKAYGD PSNYLESNRA VNTGLNVSRP NVKSTYWKTK LCIKFETTGH  240
CPFGDDCHFA HGQAELQFPG GRNEAETAGV IPISTKATIP TLPRATPVSS NDAPPSHSVP  300
PANEEEQGKK YLLKWKGPKK INRIYGDWLD DLPLVHNLPG RVGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G162600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154979.10.0hypothetical protein PHAVU_003G162600g
SwissprotQ9LT811e-93C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLV7CC960.0V7CC96_PHAVU; Uncharacterized protein
STRINGXP_007154979.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-86C3H family protein