PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G137100.1
Common NamePHAVU_003G137100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GATA
Protein Properties Length: 310aa    MW: 34651.1 Da    PI: 10.0008
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G137100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.71.9e-19176209134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C+ C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Phvul.003G137100.1 176 CADCHTTKTPLWRSGPRGPKSLCNACGIRQRKAR 209
                         *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.09E-13168210No hitNo description
SMARTSM004015.1E-19170221IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.69170206IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-15174209IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.91E-12175203No hitNo description
PROSITE patternPS003440176201IPR000679Zinc finger, GATA-type
PfamPF003203.6E-17176209IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MIPAYRHSVS SVIPLDLNED QNHELFTPTH HAYPSFSSLS SSYPLLFNPP EQEAGSHYWE  60
PTKHLPAYEQ AEKINPTRGS WDHSVTESEL KVAVWKNKER SEDHEAAAED GSVNLMSLKM  120
RMMRKTMVPD QTGAYIEDRT MHKFEDQKQP LSPLGTDNSS SSNNYSNHSN NTVRVCADCH  180
TTKTPLWRSG PRGPKSLCNA CGIRQRKARR AMAAAASGNG TVILETQKSV KGNKLQKKEK  240
KTRTQGAPQM KKKRNHGVGA KPSQSRNKFG FEDLTLRLRK SLAMHQVFPQ DEKEAAILLM  300
ALSYGLVHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G137100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-164AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154661.10.0hypothetical protein PHAVU_003G137100g
TrEMBLV7CBM80.0V7CBM8_PHAVU; Uncharacterized protein
STRINGXP_007154661.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.19e-31cytokinin-responsive gata factor 1