PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G128800.1
Common NamePHAVU_003G128800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARF
Protein Properties Length: 1164aa    MW: 130353 Da    PI: 6.6963
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G128800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.22.8e-22126227199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W +++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   
  Phvul.003G128800.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfptldySMQPPA-QELVAKDLHDNTWPFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI-- 213
                         99*****************************9545444.38************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         +++ ++l+++++r+
  Phvul.003G128800.1 214 RDEMKHLLLGIRRA 227
                         45677789999987 PP
2Auxin_resp122.72.6e-40252334183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s+F+++YnPras+seFvv+++k++ka++++vs+GmRf+m+fete+s  rr++Gt++g+sdldp rW+nS+Wr+++
  Phvul.003G128800.1 252 AAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPARWKNSQWRNIQ 334
                         79******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-43117255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-41119241IPR015300DNA-binding pseudobarrel domain
CDDcd100175.07E-19125226No hitNo description
PROSITE profilePS5086311.787126228IPR003340B3 DNA binding domain
PfamPF023622.5E-20126227IPR003340B3 DNA binding domain
SMARTSM010192.6E-21126228IPR003340B3 DNA binding domain
PfamPF065072.3E-35252334IPR010525Auxin response factor
PROSITE profilePS5174526.35610361119IPR000270PB1 domain
PfamPF023098.4E-910361122IPR033389AUX/IAA domain
SuperFamilySSF542771.37E-810491114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1164 aa     Download sequence    Send to blast
MKAPSNGFLP NSGEGERKTI NPELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYEKEAIL ASDMGLKQCR  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPTLDYSMQ PPAQELVAKD LHDNTWPFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEMKHL LLGIRRANRQ QSALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDL DPARWKNSQW RNIQVGWDES TAGERPSRVS IWEVQPVVTP  360
FYICPPPFFR PKFPRQPGMP DDESDMENTL KRGMPWLGDD FGMKDASSSI FPGFSLVQWM  420
NMQPNNHLSA AQSGCFPSML PSNTLHGNLA TEDPSKLLSF QAPVLSSPSL QLNKPNLPNQ  480
INQLQQSPVS WPQQQQQQQQ LQQQQQQQLQ QQQLQQQQQQ LQQQQQQQQL QQQQQLQQQQ  540
QLQQQQQQQL QSLLQIPMNH LQQQRQQQLP EPQNLSLLQQ LPQQLGQQPQ KQQQPSQHAT  600
LMHNGVVASN QITSQFVQPP MAYGQLQQQQ LLSGGIQPQQ GIQSASKNTF PLTSLSHDSQ  660
FQQQIDQQAN LLLRQQQQQQ TQLQQSPLQL LQHNLPQIPS QQQLPASQML QPNSSEQQLH  720
LQLLQKLQHQ QQQQHLSTST PLLQSQLLPQ QNTHQQNQQL PQTQPPVSHH QPHQVANNAL  780
STEKLLNSNN FSSSSLMQSQ QIPMNQSQNT QKSLTITRAP STLTDGDAPS CSTSPSTNNC  840
QVSPPNLLKR NQQLPATLGG SLIVEPTSNL IQELHSKPDM QNKHDLLNLK GPDQLKYKGI  900
ITDQLEASSS GTSYCLDPGN VQQNLPLSNF CMEGDAQSHP RNSLPFDTNL DDLTPDTMLL  960
RGYDSSKDLQ NLLSNYGGAP RDIETELSTA DISSQSFGVP NMPFKPGCSS DVVINEAGVL  1020
NNNGLRANQP PPPRMRTYTK VQKRGSVGRC IDVTRYRGYD ELRHDLAKMF GIEGQLDPQR  1080
TDWKLVYVDH ENDILLVGDD PWDEFVSCVQ SIKILSHSEV QQMSLDGDLG GTVPIPNQAC  1140
SGTDSGNAWR GQYEDNSAAS FNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1661535545388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G128800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154558.10.0hypothetical protein PHAVU_003G128800g
TrEMBLV7C8N60.0V7C8N6_PHAVU; Auxin response factor
STRINGXP_007154558.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49183352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19