PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.003G073700.2 | ||||||||
Common Name | PHAVU_003G073700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | VOZ | ||||||||
Protein Properties | Length: 478aa MW: 53098.5 Da PI: 6.0319 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 442.1 | 6.9e-136 | 201 | 417 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwn 91 pppsaflgpkc+lwdc+rpaqg +w+qdycssfha+lalneg+pg++pvlrp+gi+lkd+llfaalsa++qgk+vgipecegaatakspwn Phvul.003G073700.2 201 PPPSAFLGPKCSLWDCPRPAQGLDWCQDYCSSFHAALALNEGPPGMSPVLRPGGIGLKDSLLFAALSARAQGKDVGIPECEGAATAKSPWN 291 89***************************************************************************************** PP VOZ 92 aaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalal 182 a+elfdl++legetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvm+efgglkrsyymdpqp+++fewhlyeyei+++da+al Phvul.003G073700.2 292 APELFDLTVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEISKCDACAL 382 ******************************************************************************************* PP VOZ 183 yrlelklvdekksakgkvskdsladlqkklgrlta 217 yrlelklvd+kk++k+k+++ds+adlqk++grl+a Phvul.003G073700.2 383 YRLELKLVDGKKNSKTKLANDSVADLQKQMGRLSA 417 *********************************97 PP |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 478 aa Download sequence Send to blast |
MKKVPKNSCK SASHRLFKDK AKNRVDDLQV MFLDLQYARK ESRTVDAAVL EEQVHQMLRE 60 WKAELNEPSP ASSLQQGGSL GSFSTDICRL LQLCDEEDDA SSPLAAPKSE PNDQTLQAGG 120 KVMFQEGQQQ HDFPLIDECK NSTSSVQNVA ANNPDGHALE YHQFDLHQDY DHGFYTGFNG 180 TGYCEEDAIP HISSYLPSIC PPPSAFLGPK CSLWDCPRPA QGLDWCQDYC SSFHAALALN 240 EGPPGMSPVL RPGGIGLKDS LLFAALSARA QGKDVGIPEC EGAATAKSPW NAPELFDLTV 300 LEGETIREWL FFDKPRRAFE SGNRKQRSLP DYSGRGWHES RKQVMNEFGG LKRSYYMDPQ 360 PLNHFEWHLY EYEISKCDAC ALYRLELKLV DGKKNSKTKL ANDSVADLQK QMGRLSAEFP 420 HDNKRAAKGR AKVNAKVGIG GVYSASHRVT TLNGAYEYGL AAPYDYLVEN MGDYYGT* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.003G073700.2 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007153892.1 | 0.0 | hypothetical protein PHAVU_003G073700g | ||||
Refseq | XP_007153893.1 | 0.0 | hypothetical protein PHAVU_003G073700g | ||||
Swissprot | Q9SGQ0 | 0.0 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | V7C6U1 | 0.0 | V7C6U1_PHAVU; Uncharacterized protein | ||||
STRING | XP_007153891.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28520.2 | 0.0 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.003G073700.2 |
Entrez Gene | 18634177 |
Publications ? help Back to Top | |||
---|---|---|---|
|