PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G070300.1
Common NamePHAVU_003G070300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 320aa    MW: 36813.1 Da    PI: 4.4893
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G070300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-1881134356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k++++t+eq++ Le+ Fe ++++  e++ +LAk+lg++ rqV +WFqNrRa+ k
  Phvul.003G070300.1  81 KKRRLTSEQVQFLESNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFK 134
                         56689***********************************************98 PP
2HD-ZIP_I/II129.41.4e-4181171292
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         kkrrl++eqv++LE++Fe e+kLeperKv+la+eLg+qprqva+WFqnrRAR+ktkqlEkdy +Lk+ yd l+++ ++L +e+++L+ee+ 
  Phvul.003G070300.1  81 KKRRLTSEQVQFLESNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLEKDYGMLKAGYDILRRDYDNLVQENDKLKEEVY 171
                         9**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.71E-1970138IPR009057Homeodomain-like
PROSITE profilePS5007117.08676136IPR001356Homeobox domain
SMARTSM003892.7E-1778140IPR001356Homeobox domain
CDDcd000862.78E-1679137No hitNo description
PfamPF000464.7E-1681134IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.7E-2083143IPR009057Homeodomain-like
PRINTSPR000311.0E-5107116IPR000047Helix-turn-helix motif
PROSITE patternPS000270111134IPR017970Homeobox, conserved site
PRINTSPR000311.0E-5116132IPR000047Helix-turn-helix motif
PfamPF021831.7E-14136173IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MPGEMLNGGS SMTLLLQKER LPSSPDLIQT SWVQNSEPSF QGSKSLVNVV NVRNRPFFRG  60
VEKEENGDDE DFDVFPHQPG KKRRLTSEQV QFLESNFEVE NKLEPERKVQ LAKELGMQPR  120
QVAIWFQNRR ARFKTKQLEK DYGMLKAGYD ILRRDYDNLV QENDKLKEEV YSLMKVIPRE  180
KEEQNLDDTS CGAVNSEHKE EKDLIIYRGS ENGSKVALPV MVVSKQRDAN SAKSDVLDSE  240
SPHLTDGNQS SLFEPADSSH ALEPDHSNFS QEEEDILSQN ILTMPFLPMF EVEYVCYDEP  300
PENPCMFRFP VEDQTFCFW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128136RRARFKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G070300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-178AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153855.10.0hypothetical protein PHAVU_003G070300g
TrEMBLV7C6U50.0V7C6U5_PHAVU; Uncharacterized protein
STRINGXP_007153855.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.19e-43homeobox 1