PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G317000.1
Common NamePHAVU_002G317000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 320aa    MW: 36591.6 Da    PI: 7.3068
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G317000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171966148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd ll +++  +G g+W++ a++ g++Rt+k+c++rw++yl
  Phvul.002G317000.1 19 RGPWTLEEDNLLSQYISNHGEGRWNLLAKRSGLKRTGKSCRLRWLNYL 66
                        89********************************************97 PP
2Myb_DNA-binding52.61.1e-1672115146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Phvul.002G317000.1  72 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 115
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.7591466IPR017930Myb domain
SuperFamilySSF466893.88E-3017113IPR009057Homeodomain-like
SMARTSM007172.9E-151868IPR001005SANT/Myb domain
PfamPF002493.2E-161966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-232073IPR009057Homeodomain-like
CDDcd001674.58E-112166No hitNo description
PROSITE profilePS5129425.69767121IPR017930Myb domain
SMARTSM007173.5E-1571119IPR001005SANT/Myb domain
PfamPF002491.3E-1572115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2374120IPR009057Homeodomain-like
CDDcd001672.86E-1176115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MSTSKSVSSS SEDDNELRRG PWTLEEDNLL SQYISNHGEG RWNLLAKRSG LKRTGKSCRL  60
RWLNYLKPDV KRGNLTPQEQ LLILELHSKW GNRWSKIAQH LPGRTDNEIK NYWRTRIQKQ  120
ARHLKIDTDS REFQELVRRF WMPRLLQKAK ESSSSSSSVM PIQNQAIPLL LDDGVSQQST  180
VGSIPWQGPC MSMNGGSSTY MEQHEQNSDS EHNSGSCISF SESANIPKVS QHFGHTMDQF  240
HGLSNNEFGS FSYDGYHVND NAYEMNTFKT TTARVAQDFQ YPVGDCQTAA TGWLSNDFAC  300
TMWNTDELWQ FSKLQKQDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25161214108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G317000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160381.10.0hypothetical protein PHAVU_002G317000g
TrEMBLV7CSX70.0V7CSX7_PHAVU; Uncharacterized protein
STRINGXP_007160381.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-78myb domain protein 62