PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G310200.1
Common NamePHAVU_002G310200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 243aa    MW: 26154.9 Da    PI: 4.5905
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G310200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.5e-194494155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Phvul.002G310200.1 44 PVYRGVRMRS-WGKWVSEIREPRK---KNRIWLGTFATAEMAARAHDVAALAIKG 94
                        68*****998.**********854...59**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.2E-134494IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2145103IPR016177DNA-binding domain
PROSITE profilePS5103223.06445102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-3245103IPR001471AP2/ERF domain
SMARTSM003804.4E-3745108IPR001471AP2/ERF domain
PRINTSPR003671.8E-104657IPR001471AP2/ERF domain
CDDcd000181.21E-3146104No hitNo description
PRINTSPR003671.8E-106884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAEQPSSEAS SSASTGKHSS SEAHLEGPDQ KRPKQARDSS SKHPVYRGVR MRSWGKWVSE  60
IREPRKKNRI WLGTFATAEM AARAHDVAAL AIKGNSAILN FPELAGSLPR PDSNSPRDVQ  120
AAAAKAAAME VMDPPTTPSW TLSQCSSSSS LAGSSSSGEA STAEDLGEIV ELPSLGTSLE  180
IPERSEEVVF VEPVDGWLYS EAWCDGIYDE RECGGYFIGD EISMRESESM ILCGFEGSLW  240
QH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1936102572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12734PDQKRPKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G310200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-165AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160302.11e-177hypothetical protein PHAVU_002G310200g
SwissprotQ391272e-57TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLV7CTS71e-175V7CTS7_PHAVU; Uncharacterized protein
STRINGXP_007160302.11e-176(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.12e-53ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]