PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G306100.1
Common NamePHAVU_002G306100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 360aa    MW: 39933.8 Da    PI: 7.2923
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G306100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-07125145526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C++f++ G Ck Gd C +aHg
  Phvul.002G306100.1 125 ACPDFRK-GSCKKGDACEYAHG 145
                         7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0872109IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5120146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.497121147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5124147IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-6125145IPR000571Zinc finger, CCCH-type
SMARTSM0035614155178IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.643155179IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MMLGETHRAN PTVHVPPWPL IHESSPEMFS PYAANADYSP YSLQEALNAL QHYDSTDAES  60
DSDVPSLEPE VPVDAYSCDH FRMFEFKVRR CARGRSHDWT ECPYAHPGEK ARRRDPRKYH  120
YSGTACPDFR KGSCKKGDAC EYAHGVFECW LHPARYRTQP CKDGTSCRRR VCFFAHTPEQ  180
LRVLPQQSPR SADSYDGSPL RHAVESSKTV APFVSSPGSV SPPVESPPMS PMTRSGSVCV  240
NEMVASLRNL QLGKVKSLPS CWNVIGSPGF GSPRGPVIRP GFFSLPSTPT QAPVRGGVNY  300
FDHWDQSCQE EPVMERVESG RNIRARMFEK LSKENVLDGS GSGEPVAPDV GWVSELVSR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G306100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160259.10.0hypothetical protein PHAVU_002G306100g
SwissprotQ9M0G21e-132C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLV7CSC50.0V7CSC5_PHAVU; Uncharacterized protein
STRINGXP_007160259.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-131C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]