PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G279000.1
Common NamePHAVU_002G279000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 299aa    MW: 33094.9 Da    PI: 7.5965
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G279000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.5e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd+ll+++v+ +G g+W+  ++  g+ R++k+c++rw +yl
  Phvul.002G279000.1 14 KGAWSKEEDQLLINYVNCHGEGNWRCLPKAAGLLRCGKSCRLRWMNYL 61
                        79******************************99************97 PP
2Myb_DNA-binding50.64.5e-1667111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +g++T eE +l+++ + +lG++ W+ Ia++++ gRt++++k++w+++
  Phvul.002G279000.1  67 KGNFTREETDLIIHHHSLLGNR-WSQIAACLP-GRTDNEIKNYWNTH 111
                         79********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.557961IPR017930Myb domain
SuperFamilySSF466891.31E-2912108IPR009057Homeodomain-like
SMARTSM007171.6E-101363IPR001005SANT/Myb domain
PfamPF002491.8E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-221568IPR009057Homeodomain-like
CDDcd001671.82E-101661No hitNo description
PROSITE profilePS5129424.42362116IPR017930Myb domain
SMARTSM007173.1E-1666114IPR001005SANT/Myb domain
PfamPF002493.4E-1467111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-2669116IPR009057Homeodomain-like
CDDcd001673.08E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGRTPCCLKQ HIFKGAWSKE EDQLLINYVN CHGEGNWRCL PKAAGLLRCG KSCRLRWMNY  60
LRPNLKKGNF TREETDLIIH HHSLLGNRWS QIAACLPGRT DNEIKNYWNT HIKRQLYANG  120
MDPVTHKPLN KETNETTDPP ANSQVTEVAT TSENGTDNNN NSCSFTTGDN NQINYFNVFL  180
NSKVQISSDD YSTGDKGECS NNSSGVTIEE AHPQLNLNLS LSPPPKPQDF MVNPKRLQPQ  240
GQQEEQVLFP GNVNVSGGKQ SVCLWCSLGL QSSHACSSKD KGCCTATTVA PPVGNRDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-29121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G279000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159923.10.0hypothetical protein PHAVU_002G279000g
TrEMBLV7CNZ00.0V7CNZ0_PHAVU; Uncharacterized protein
STRINGXP_007159923.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-70myb domain protein 4