PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G242000.1
Common NamePHAVU_002G242000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 404aa    MW: 45804.1 Da    PI: 4.9571
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G242000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.61.9e-33151062102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+ye+++d ++++++sws +++sf+v+++ efa+++Lp++Fkh+nf+SF+RQLn+YgFkk++ e+         weF+++ F +g+ +
  Phvul.002G242000.1  15 FLAKTYEMVDDLSTNSIVSWSVSSKSFIVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFKKIDPEQ---------WEFANDDFVRGQPH 96 
                         9********************999****************************************9998.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         l+++i+r+k 
  Phvul.002G242000.1  97 LMKNIHRRKP 106
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-5911104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.26E-3311104IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-3612104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.8E-3015104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-181538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-185365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-186678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MMDEALGSSC SLPPFLAKTY EMVDDLSTNS IVSWSVSSKS FIVWNPPEFA RDLLPRFFKH  60
NNFSSFIRQL NTYGFKKIDP EQWEFANDDF VRGQPHLMKN IHRRKPVHSH SLQNLQAQGP  120
LQDSERQGFT DGIEKLKRDK ERLLVELQKF QHEWQTYEIQ IHCSNDRLEK LEQKQHKMVS  180
SVSHVLQKPV IAVNILPLTE TMDRKRRLPR SGHYYDEASI EDAIETSQML PRENAENTTL  240
LALNVERLDQ LESSVAFWEA IAHDIGDNFA QIQSNMDFDE STSCADSPSI SCAQLDVDVR  300
PKSSGIDMNS EPTAAAVPDP LASKDQPAGI TVAATGVNDV FWEQFLTEDP GASETQEVQS  360
ERKDCDGRKN EGKPNDHSKF WWNIRSANNL SEPMGHVGQA EKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-21210412129Heat shock factor protein 1
5d5v_B1e-21210412129Heat shock factor protein 1
5d5v_D1e-21210412129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202207DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G242000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0526270.0AY052627.1 Phaseolus acutifolius heat shock transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159491.10.0hypothetical protein PHAVU_002G242000g
SwissprotO494031e-121HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLV7CQF10.0V7CQF1_PHAVU; Uncharacterized protein
STRINGXP_007159491.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-116heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]