PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G234100.2
Common NamePHAVU_002G234100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family LSD
Protein Properties Length: 139aa    MW: 15159.4 Da    PI: 7.5891
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G234100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1451.7e-145074125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        Cg+C+ lLsYPrGA++V+C++C tV
  Phvul.002G234100.2 50 CGSCHRLLSYPRGAKHVKCSCCETV 74
                        ************************9 PP
2zf-LSD144.62.3e-1488112125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         Cg+C +lL+YP+GA+ VRC++C++V
  Phvul.002G234100.2  88 CGSCAVLLMYPYGASQVRCSSCQFV 112
                         ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.7E-164777IPR005735Zinc finger, LSD1-type
PfamPF069437.0E-125074IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.2E-1385113IPR005735Zinc finger, LSD1-type
PfamPF069433.3E-1188112IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MQSQQTEKEE EDEGPPPGWQ PISTHPPPPP QLQPQPPPPQ RPCGWVQMVC GSCHRLLSYP  60
RGAKHVKCSC CETVNIVLEA DQVGQVECGS CAVLLMYPYG ASQVRCSSCQ FVTEIGAHNK  120
RPPWSVQQRK PIPAKSGC*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G234100.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-43AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159389.11e-95hypothetical protein PHAVU_002G234100g
SwissprotO654264e-42LOL2_ARATH; Protein LOL2
TrEMBLV7CPU33e-94V7CPU3_PHAVU; Uncharacterized protein
STRINGXP_007159388.11e-80(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.13e-41lsd one like 2