PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G234100.1 | ||||||||
Common Name | PHAVU_002G234100g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | LSD | ||||||||
Protein Properties | Length: 157aa MW: 17112.8 Da PI: 6.4762 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 44.8 | 2.1e-14 | 50 | 74 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ lLsYPrGA++V+C++C tV Phvul.002G234100.1 50 CGSCHRLLSYPRGAKHVKCSCCETV 74 ************************9 PP | |||||||
2 | zf-LSD1 | 44.3 | 2.8e-14 | 88 | 112 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GA+ VRC++C++V Phvul.002G234100.1 88 CGSCAVLLMYPYGASQVRCSSCQFV 112 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.1E-16 | 47 | 77 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.5E-12 | 50 | 74 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 7.6E-13 | 85 | 113 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.0E-11 | 88 | 112 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MQSQQTEKEE EDEGPPPGWQ PISTHPPPPP QLQPQPPPPQ RPCGWVQMVC GSCHRLLSYP 60 RGAKHVKCSC CETVNIVLEA DQVGQVECGS CAVLLMYPYG ASQVRCSSCQ FVTEIGVHSL 120 GETPLISLSY KTLPMYIFAL QKAPVKSLYT TTLTLV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G234100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 3e-44 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007159388.1 | 1e-110 | hypothetical protein PHAVU_002G234100g | ||||
Swissprot | O65426 | 1e-34 | LOL2_ARATH; Protein LOL2 | ||||
TrEMBL | V7CMG0 | 1e-109 | V7CMG0_PHAVU; Uncharacterized protein | ||||
STRING | XP_007159388.1 | 1e-109 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13026 | 31 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 2e-34 | lsd one like 2 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G234100.1 |
Entrez Gene | 18638883 |