PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.002G226100.1

Common Name

PHAVU_002G226100g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Dof

Protein Properties

Length: 314aa MW: 34179.1 Da PI: 8.2733

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.002G226100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	113.8	7.7e-36	43	101	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++++lkcprCds+ntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPvGggr++++ Phvul.002G226100.1 43 PSESLKCPRCDSANTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRV 101 67899***********************************************9766554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-19	44	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-31	46	99	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.354	47	101	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	49	85	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MGLSSKQVSS SGLDWKQTLL EAQDLELPKP NLMRKQQQQQ TQPSESLKCP RCDSANTKFC 60 YYNNYNKSQP RHFCRACKRH WTKGGTLRNV PVGGGRKNKR VKKTNTPTPS STTATTTPTT 120 ATPSTCTTTV TNSIGNMDAM LGSSHLTIHT PLADDQKNMA SSLYQALIRP PPLLLQQNLM 180 NARDLDGKDF GIGIGNNGIF PSSTLPLTHQ SQSLLFPFST SSGSFDTNPC SVSTSLRSSN 240 VYNYGEEFKA VEEPTINSTA IVPSTGGTNT QPWEIAATGG LGLGTSNYWN WEDFDSLVST 300 DLKDPWDDSD IKP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.002G226100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007159297.1	0.0	hypothetical protein PHAVU_002G226100g
TrEMBL	V7CQU0	0.0	V7CQU0_PHAVU; Uncharacterized protein
STRING	XP_007159297.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	7e-24	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Phvul.002G226100.1
Entrez Gene	18638802