PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G215500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 217aa MW: 24572.3 Da PI: 9.9818 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.4 | 1.4e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRr g+ KKA ELS+LCdaev +i+fsst+kly+y+s Phvul.002G215500.1 10 RIDNSTSRQVTFSKRRSGLVKKARELSILCDAEVGLIVFSSTDKLYDYAS 59 9***********************************************86 PP | |||||||
2 | K-box | 74.7 | 2.5e-25 | 86 | 167 | 17 | 98 |
K-box 17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + e+a L+++++ +q+ +R+++Ge+L+ L +keL +Le++Lekslk +R kK+++l+++++el +k + +en +L++k+ Phvul.002G215500.1 86 IKGEVASLRQQVQYMQKCNRQMMGEELSGLGIKELGNLENRLEKSLKGVRVKKDQILIDEVKELHQKGTLAYQENVELHRKI 167 6789****************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.0E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.796 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.77E-40 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 3.27E-31 | 2 | 76 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.296 | 83 | 173 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 7.7E-23 | 85 | 167 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MGRGKIVIQR IDNSTSRQVT FSKRRSGLVK KARELSILCD AEVGLIVFSS TDKLYDYASS 60 SLKSVIDRYN KFKEDPHQLM NPALEIKGEV ASLRQQVQYM QKCNRQMMGE ELSGLGIKEL 120 GNLENRLEKS LKGVRVKKDQ ILIDEVKELH QKGTLAYQEN VELHRKINLI REDNEKLQKM 180 IEAKGRKEGA ATSNPLSTIT YGYDIFSPIS LKLSQP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-23 | 1 | 78 | 1 | 77 | MEF2C |
5f28_B | 4e-23 | 1 | 78 | 1 | 77 | MEF2C |
5f28_C | 4e-23 | 1 | 78 | 1 | 77 | MEF2C |
5f28_D | 4e-23 | 1 | 78 | 1 | 77 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G215500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 7e-68 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027921414.1 | 1e-133 | MADS-box transcription factor 23-like isoform X1 | ||||
Refseq | XP_027921415.1 | 1e-133 | MADS-box transcription factor 23-like isoform X1 | ||||
Refseq | XP_027921417.1 | 1e-133 | MADS-box transcription factor 23-like isoform X1 | ||||
Swissprot | Q6EP49 | 6e-79 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A4D6L6R6 | 1e-132 | A0A4D6L6R6_VIGUN; MADS-box transcription factor | ||||
STRING | GLYMA08G07001.1 | 1e-119 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF891 | 25 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 3e-78 | AGAMOUS-like 21 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G215500.1 |
Publications ? help Back to Top | |||
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