PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.002G160100.1

Common Name

PHAVU_002G160100g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

WRKY

Protein Properties

Length: 240aa MW: 27043.6 Da PI: 8.4677

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.002G160100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	83.5	2.1e-26	131	187	2	57
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57 +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k ve s+ dp v+++tY+ eH Phvul.002G160100.1 131 SDPWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKFVELSHLDPGVLIVTYTAEHS 187 799**********************998************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.3E-27	116	187	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-23	124	188	IPR003657	WRKY domain
PROSITE profile	PS50811	27.485	125	187	IPR003657	WRKY domain
SMART	SM00774	7.8E-30	130	191	IPR003657	WRKY domain
Pfam	PF03106	1.3E-21	132	187	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MVWDLQSIVG CTIAPATTMD NPNLILSQGF CAEPDDLLYD FQEFSETKTV LNELEEIYKP 60 FYPNVHHNPH PIISSSQPIP DKNVKELKLS NKVDVQAQDL HDTEASTCRK SKKKQNKKRV 120 VKHMNAVDGV SDPWAWRKYG QKPIKGSPYP RSYYRCSSSK GCLARKFVEL SHLDPGVLIV 180 TYTAEHSPHP TRKNSRTGRG SSTIAPPTTH SDDMQTLSSR INVVVEALEV EHERFKVQQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-16	119	186	2	69	WRKY transcription factor 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.002G160100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007158533.1	0.0	hypothetical protein PHAVU_002G160100g
TrEMBL	V7CK03	1e-180	V7CK03_PHAVU; Uncharacterized protein
STRING	XP_007158533.1	1e-180	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6217	31	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	2e-20	WRKY DNA-binding protein 27

Link Out ? help Back to Top
Phytozome	Phvul.002G160100.1
Entrez Gene	18638120