PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G159000.1
Common NamePHAVU_002G159000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 639aa    MW: 71157.4 Da    PI: 6.5102
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G159000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.13e-084164531954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yps  ++  LA+++gL+  qV++WF N R +
  Phvul.002G159000.1 416 FEHflHPYPSDVDKHILARQTGLSRGQVSNWFINARVR 453
                         554459******************************88 PP
2BELL116.81e-37278348272
                BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         + elqk+k+kLls+leeVd+rYk+y++q++ v+ssFe+vag g+a++Y +lAlka+SrhF+cLkd i +qi
  Phvul.002G159000.1 278 FVELQKRKTKLLSMLEEVDRRYKHYRNQMKSVVSSFETVAGNGAATVYSALALKAMSRHFKCLKDGILGQI 348
                         679******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.4E-56216346IPR006563POX domain
PfamPF075262.6E-45222344IPR006563POX domain
PROSITE profilePS5007111.758394457IPR001356Homeobox domain
CDDcd000864.76E-11397458No hitNo description
SMARTSM003891.4E-8397461IPR001356Homeobox domain
SuperFamilySSF466891.11E-16398464IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-27400463IPR009057Homeodomain-like
PfamPF059204.2E-17414453IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MARQLCEEKS STGFCYSDVS PGNPTMLVNQ IQGFVSEPEM YNLSTGMEMI GFPKSDTNAV  60
MWRSFIPKPG PSSSKTINDS STPFYHHDYN NSKPSDFTPG NISEASAENL MVGAHDSAPW  120
QDDNSHSRFD DSSLRCVFPC EANERPSQGL SLSLSSTNPS TIGLQSFELR QTSHHPDFVP  180
SSSREGFFGK PVSVQQQQML QDGYVSSNSK AASVYQQGHF LVKNSKYLVP AQDLLNEFCS  240
LDAKQSEAGK PKSLKKQWEE ENNCSGSLKK PSLTSLEFVE LQKRKTKLLS MLEEVDRRYK  300
HYRNQMKSVV SSFETVAGNG AATVYSALAL KAMSRHFKCL KDGILGQIQT TRKAMGEKDP  360
VAPGTTRGET PRLKVIDQAL RQQRAFQQMS MMETHPWRPQ RGLPERAVSV LRAWLFEHFL  420
HPYPSDVDKH ILARQTGLSR GQVSNWFINA RVRLWKPMVE EMYLEEVKDH ENNMASSEGA  480
TDPENDINPN VQNPPPHSAR SEDQKPSLLR IDSECASSII NNNHTLDNKN DPKGQEQCFG  540
SVELDFSSYT HHSSGMVSFG SNDQNGNSQS GVSLTLGLQQ HGVSLAFPPP TQSSLYYPNP  600
RDQIEDCQPV QYSLLDGEGQ NLPYRNLMGA QLLHDLAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15403461563Homeobox protein Meis2
3k2a_B2e-15403461563Homeobox protein Meis2
4xrm_A2e-15403461563Homeobox protein Meis2
4xrm_B2e-15403461563Homeobox protein Meis2
4xrs_A2e-15403460158Homeobox protein Meis1
4xrs_B2e-15403460158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G159000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158519.10.0hypothetical protein PHAVU_002G159000g
SwissprotQ388971e-133BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLV7CMC50.0V7CMC5_PHAVU; Uncharacterized protein
STRINGXP_007158519.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46502030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-135TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]