PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G110600.1
Common NamePHAVU_002G110600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bZIP
Protein Properties Length: 194aa    MW: 22178 Da    PI: 5.7903
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G110600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.53.8e-1582135558
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                         ++ rr+++NRe+ArrsR RK++ ++eL   v  L +eN+ L+++l+++++  ++
  Phvul.002G110600.1  82 RKHRRMISNRESARRSRMRKQKHLDELWSQVVRLRTENHNLIDKLNHMSDSHDR 135
                         688***************************************999998876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.2E-1578142IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.74980143IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.25E-1382132No hitNo description
PfamPF001702.9E-1382140IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.7E-1382155No hitNo description
CDDcd147021.12E-2083134No hitNo description
PROSITE patternPS00036085100IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MVPSEIRGVN YLAPENPFLV PPNFGLLQND IPNLHLNTLL SNFPNCHFPP SGLEFVAPHS  60
CLSSNSTSDE ADEIQFNIID ERKHRRMISN RESARRSRMR KQKHLDELWS QVVRLRTENH  120
NLIDKLNHMS DSHDRVLQEN TRLKEEASDL RQMLADMQIG TSFACTMEEL EDLPCNKPGP  180
SNQLITPADM IHE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194101RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G110600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3505050.0AF350505.1 Phaseolus vulgaris bZip transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157937.11e-141hypothetical protein PHAVU_002G110600g
SwissprotQ9FMC26e-35BZP43_ARATH; Basic leucine zipper 43
TrEMBLQ9AT291e-140Q9AT29_PHAVU; BZip transcription factor
STRINGXP_007157937.11e-141(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16043399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.11e-48basic leucine-zipper 42
Publications ? help Back to Top
  1. Rodriguez-Uribe L,O'Connell MA
    A root-specific bZIP transcription factor is responsive to water deficit stress in tepary bean (Phaseolus acutifolius) and common bean (P. vulgaris).
    J. Exp. Bot., 2006. 57(6): p. 1391-8
    [PMID:16531461]
  2. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]