PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G092100.1
Common NamePHAVU_002G092100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 232aa    MW: 26322.6 Da    PI: 8.1497
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G092100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.1e-161360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W+++Ed++l+d+++++G  +W+t ++  g+ R++k+c++rw +yl
  Phvul.002G092100.1 13 KGAWSKQEDQKLIDYINKHGEVCWRTLPQAAGLLRCGKSCRLRWINYL 60
                        79******************99**********99************97 PP
2Myb_DNA-binding51.42.4e-1666110147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
  Phvul.002G092100.1  66 RGNFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110
                         8999******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.112860IPR017930Myb domain
SuperFamilySSF466893.2E-2711107IPR009057Homeodomain-like
SMARTSM007178.5E-131262IPR001005SANT/Myb domain
PfamPF002493.4E-141360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-211467IPR009057Homeodomain-like
CDDcd001673.16E-101560No hitNo description
PROSITE profilePS5129426.47961115IPR017930Myb domain
SMARTSM007173.0E-1565113IPR001005SANT/Myb domain
PfamPF002497.5E-1566110IPR001005SANT/Myb domain
CDDcd001676.25E-1168111No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2568116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MRKPSSDIKD LNKGAWSKQE DQKLIDYINK HGEVCWRTLP QAAGLLRCGK SCRLRWINYL  60
RPDLKRGNFA EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IRRKLISKGI  120
DPNNHRLDHK VPSLQNPPMS DDSSEPFGTK DADKNEPCKS HHHVYHCGEV SDDVSGEAQS  180
SYALPDLNLD LSISIPSESH TISENNLKPF RQSYSSRKLP CDSPSTLLLF Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-3081152108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G092100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-156AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157714.11e-171hypothetical protein PHAVU_002G092100g
SwissprotP813933e-73MYB08_ANTMA; Myb-related protein 308
TrEMBLV7CK391e-169V7CK39_PHAVU; Uncharacterized protein
STRINGXP_007157714.11e-170(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.13e-73myb domain protein 7
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]