PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G086600.1 | ||||||||
Common Name | PHAVU_002G086600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | TCP | ||||||||
Protein Properties | Length: 421aa MW: 44213.9 Da PI: 7.4081 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 131.9 | 5.9e-41 | 70 | 194 | 2 | 128 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++ + s +ss+s+ s++ Phvul.002G086600.1 70 PPKRTSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSTMSAPshy 160 789******************************************************************9997777777777755555444 PP TCP 89 ...............kaaksaakskksqksaasalnlakesrakarararertre 128 + a+ a+ r ra+ + Phvul.002G086600.1 161 frgnyfnpstfststA---------------------AAAAAAQLRNRAEWDRNM 194 5444444444433322.....................222223333333222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.4E-39 | 74 | 210 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.265 | 76 | 130 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MELEPDHHQN GIRTRPNFPL QLLEKKDLDD VTEQPCSTTT RDTVLTATTI TTTSATNNNL 60 HLADQSKKPP PKRTSTKDRH TKVDGRGRRI RMPAACAARV FQLTRELGHK SDGETIEWLL 120 QQAEPSVIAA TGTGTIPANF TSLNISLRSS GSTMSAPSHY FRGNYFNPST FSTSTAAAAA 180 AAQLRNRAEW DRNMSMVMED SRRSMLENTS SISAILNFNP MGNINVIQQA KQELREESGG 240 GLELVATDSD GSLGRKRRPE QELSQMGSYL IQSSTGSLPA SHASNTAAFW MVAGHGNQSM 300 SGGGGGGGGS NGNDNPIWAI PSVGNSGVYR GAMSPPGGIH FMNFASPMPL MPGGQLGSGM 360 VGSGGGGSGS AQLLSESNLG MLAALNAYRQ IPANGVSESP GSAGQPHGGD DGRDSTSQHS 420 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G086600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007157639.1 | 0.0 | hypothetical protein PHAVU_002G086600g | ||||
TrEMBL | V7CJV7 | 0.0 | V7CJV7_PHAVU; Uncharacterized protein | ||||
STRING | XP_007157639.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2120 | 32 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47620.1 | 4e-47 | TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G086600.1 |
Entrez Gene | 18637366 |