PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G067200.1
Common NamePHAVU_002G067200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 328aa    MW: 36979.8 Da    PI: 4.4983
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G067200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox598e-1986139356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k++++t+eq++ Le+ Fe ++++  e++ +LAk+lgL+ rqV +WFqNrRa+ k
  Phvul.002G067200.1  86 KKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFK 139
                         56689***********************************************98 PP
2HD-ZIP_I/II130.75.8e-4286177293
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         kkrrl++eqv++LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEkdy +Lk++yd+lk + e+L +e+++L++e++
  Phvul.002G067200.1  86 KKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASYDRLKGDYESLLQENDKLKAEVN 176
                         9**************************************************************************************9997 PP

         HD-ZIP_I/II  93 e 93 
                         +
  Phvul.002G067200.1 177 S 177
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.24E-1976143IPR009057Homeodomain-like
PROSITE profilePS5007117.37881141IPR001356Homeobox domain
SMARTSM003891.5E-1783145IPR001356Homeobox domain
CDDcd000868.19E-1884142No hitNo description
PfamPF000462.5E-1686139IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-1988148IPR009057Homeodomain-like
PRINTSPR000315.1E-6112121IPR000047Helix-turn-helix motif
PROSITE patternPS000270116139IPR017970Homeobox, conserved site
PRINTSPR000315.1E-6121137IPR000047Helix-turn-helix motif
PfamPF021831.3E-17141182IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAGGKLHPGS NMSLLLQNDR LPCSSEVLES LWAHTSNAAS FQGSKSMVDF ENVSGGRVTD  60
RPFFQALEKE DNCDDDYEGC FHQPGKKRRL TSEQVQFLER NFEVENKLEP ERKVQLAKEL  120
GLQPRQVAIW FQNRRARFKT KQLEKDYGTL KASYDRLKGD YESLLQENDK LKAEVNSLES  180
KLILRDKEKE NSDDKSSPDA VNSPHKEPMD LISNSTSENG TKVSLPIMVT CKQEDANSAK  240
SDVLDSDSPH CTDGNHPSSF VEPADSSHAF EPDHSDFSQD EEDNLSESLL TLPCLPKVEE  300
ACYDDPPENP CNFGFHVEDQ TFCFWPY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133141RRARFKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G067200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4026050.0AF402605.1 Phaseolus vulgaris homeodomain leucine zipper protein HDZ2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157405.10.0hypothetical protein PHAVU_002G067200g
TrEMBLQ93XA40.0Q93XA4_PHAVU; Homeodomain leucine zipper protein HDZ2
STRINGXP_007157405.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-46homeobox 1