PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G004800.2 | ||||||||
Common Name | PHAVU_002G004800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ARR-B | ||||||||
Protein Properties | Length: 561aa MW: 62254.1 Da PI: 6.3608 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.3 | 7e-28 | 315 | 369 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH++Fv+aveqL G+++A+P++ile+mkv+gLt+++v+SHLQkYR++ Phvul.002G004800.2 315 KMKVDWTPELHKKFVKAVEQL-GIDQAIPSRILEIMKVEGLTRHNVASHLQKYRIH 369 5689*****************.********************************86 PP | |||||||
2 | Response_reg | 28.7 | 6.6e-11 | 20 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedale 88 vl+ d +++ + + + l+ +y +v + d eal + + +++ ++ ++ + + G+++l++ ++lp i+ + ++ +++ + Phvul.002G004800.2 20 VLVLDGDRSSAAEIGEQLQAMDY-NVSIFYDENEALSAISSSPegFHVAIVEVSTSSsLGGFKFLENA----KDLPTIMTSKNQCLNTTMK 105 789999999999***********.***************888888*******9999988999988653....4799999999999****** PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 ++ +Ga +flsKp ++++l + Phvul.002G004800.2 106 CIALGAVEFLSKPLSEDKLQN 126 ****************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 3.56E-15 | 16 | 134 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.5E-16 | 16 | 148 | No hit | No description |
SMART | SM00448 | 7.3E-4 | 18 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 20.4 | 19 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.9E-8 | 20 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.62E-8 | 21 | 131 | No hit | No description |
PROSITE profile | PS51294 | 15.958 | 312 | 371 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-27 | 313 | 372 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.85E-18 | 314 | 371 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.3E-25 | 315 | 370 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-7 | 318 | 367 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 561 aa Download sequence Send to blast |
MVCTANDLQG WKDFPKGLRV LVLDGDRSSA AEIGEQLQAM DYNVSIFYDE NEALSAISSS 60 PEGFHVAIVE VSTSSSLGGF KFLENAKDLP TIMTSKNQCL NTTMKCIALG AVEFLSKPLS 120 EDKLQNIWQH VVHKAFNAGA NGLSESLKPV KESLESVLHL QTGNEQDKTH KRTMSIDLEN 180 VSKFGDDDKE QSVCDKYPAP STPQLKHGTR LLDDGDCHEQ TNFSTEKESG EHDGECKSVE 240 ASCENLNAES SPQPTEPEET LIKEEEDFAN GSKGERAVSP NLHNEKFLTN ADGHTSSKKT 300 GVLHDSCEIK ANRKKMKVDW TPELHKKFVK AVEQLGIDQA IPSRILEIMK VEGLTRHNVA 360 SHLQKYRIHK RQSAPGEEDR KWHNQRDAMQ RSFYLQRPIM AYPSYHSNQT LSPAPIYPMW 420 GQPGSQMAGV QMWGSPAYPL WHPTESWNWK PYPGMHVDAW GCPLFPPPQA PGFPYNQNIP 480 GLHTPKAVDY RFGMPRSSFE HHPAEEVVDK VVKEAINKPW LPLPLGLKAP CTDSVLAELS 540 KQGISSIPLG NKGSSAPKPC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 8e-17 | 320 | 369 | 6 | 55 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G004800.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007156636.1 | 0.0 | hypothetical protein PHAVU_002G004800g | ||||
Refseq | XP_007156637.1 | 0.0 | hypothetical protein PHAVU_002G004800g | ||||
Swissprot | Q6LA43 | 1e-137 | APRR2_ARATH; Two-component response regulator-like APRR2 | ||||
TrEMBL | V7CH79 | 0.0 | V7CH79_PHAVU; Uncharacterized protein | ||||
STRING | XP_007156636.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.6 | 1e-126 | ARR-B family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G004800.2 |
Entrez Gene | 18636520 |
Publications ? help Back to Top | |||
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