PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G264600.1
Common NamePHAVU_001G264600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 389aa    MW: 45302.3 Da    PI: 9.1932
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G264600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011142165123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         y+C  Cg+ F +++ L++H +  H
  Phvul.001G264600.1 142 YRCRVCGRKFHTNDKLVNHFKQlH 165
                         9******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10104.9E-860143IPR029060PIN domain-like
SuperFamilySSF576671.99E-6138168No hitNo description
PROSITE profilePS5015711.926142170IPR007087Zinc finger, C2H2
SMARTSM003550.0068142165IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280144165IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.9E-5144166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
CDDcd061677.11E-13159301No hitNo description
PfamPF019364.2E-8214294IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10104.9E-8227281IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MVTFKSYLSY RRTEIPFRIF RFRSTFFLSL EATCWHIYGD LRYYHSGSEW GKNQKLNPNE  60
KPNRVGLFWD LDNRPPNAIP PYEVANKLRI AASSFGIVRY MVAYANSHTF SHVPQSVREK  120
REEREKLHRL ENKGVIKRNE PYRCRVCGRK FHTNDKLVNH FKQLHEREHR KRMSQIESAR  180
GSRRVKLVAK YSMKMEKYKK AASAILTPKV GYGLADELTR AGFWVQTVSD KLQAADRALQ  240
SHIVDVMDHR QVECVVLVSD DSDFVDVIKE ARQRCLKTVV IGDIDDGVLK RTADTAFSWV  300
EILMGKAKKQ AVSVVKKWKD RDILKRIDWT CNPDADEKKY NVDDTIAETS EDDNFEDTCD  360
EVDDVYKDDR GSWWELDSDN DVTKRQSG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G264600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163793.10.0hypothetical protein PHAVU_001G264600g
TrEMBLV7D0560.0V7D056_PHAVU; Uncharacterized protein
STRINGXP_007163793.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75002533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-112C2H2 family protein