PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G263400.2
Common NamePHAVU_001G263400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27663.3 Da    PI: 7.9308
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G263400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.11.5e-30959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqvtf+kRrng+lKKA+ELSvLCdae a+iifs++gklye++s
  Phvul.001G263400.2  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSTRGKLYEFCS 59
                        79***********************************************96 PP
2K-box95.86.6e-32841759100
               K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         ++ea + s+qqe+ kLk+++e Lqr qR+l+GedL++Ls +eL++Le+qL++slk+iRs++++++l+q++++q+ke+ l e+n+aLr++le
  Phvul.001G263400.2  84 TKEALELSSQQEYLKLKARYEALQRFQRNLMGEDLGPLSSNELESLERQLDSSLKQIRSTRTQFMLDQLSDSQRKEHLLGEANTALRQRLE 174
                         666667799*******************************************************************************998 PP

               K-box 100 e 100
                         e
  Phvul.001G263400.2 175 E 175
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.3E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.983161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-32280IPR002100Transcription factor, MADS-box
CDDcd002651.13E-44276No hitNo description
PRINTSPR004043.4E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-323859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.01889179IPR002487Transcription factor, K-box
PfamPF014867.4E-2591173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AELALIIFST RGKLYEFCST  60
SSMLKTLERY QKCNYGAPEN NASTKEALEL SSQQEYLKLK ARYEALQRFQ RNLMGEDLGP  120
LSSNELESLE RQLDSSLKQI RSTRTQFMLD QLSDSQRKEH LLGEANTALR QRLEEYQINQ  180
FQLNPSGEDM GYDRHPGQHQ GDALFQPLEC EPTLQMGYRP DPVSVITGGP SMNNYMAGWL  240
P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-42751731101Developmental protein SEPALLATA 3
4ox0_B2e-42751731101Developmental protein SEPALLATA 3
4ox0_C2e-42751731101Developmental protein SEPALLATA 3
4ox0_D2e-42751731101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G263400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ8784240.0AJ878424.1 Glycine max mRNA for MADS transcription factor (mads28 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163780.11e-179hypothetical protein PHAVU_001G263400g
SwissprotQ8LLR01e-144MADS4_VITVI; Agamous-like MADS-box protein MADS4
TrEMBLV7D0871e-178V7D087_PHAVU; Uncharacterized protein
STRINGXP_007163779.11e-176(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.21e-118MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]