PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G263400.1
Common NamePHAVU_001G263400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 27875.6 Da    PI: 7.9308
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G263400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.11.5e-30959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqvtf+kRrng+lKKA+ELSvLCdae a+iifs++gklye++s
  Phvul.001G263400.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSTRGKLYEFCS 59
                        79***********************************************96 PP
2K-box91.41.6e-309317716100
               K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                         s+qqe+ kLk+++e Lqr qR+l+GedL++Ls +eL++Le+qL++slk+iRs++++++l+q++++q+ke+ l e+n+aLr++lee
  Phvul.001G263400.1  93 SSQQEYLKLKARYEALQRFQRNLMGEDLGPLSSNELESLERQLDSSLKQIRSTRTQFMLDQLSDSQRKEHLLGEANTALRQRLEE 177
                         689******************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.3E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.983161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-32277IPR002100Transcription factor, MADS-box
CDDcd002651.03E-44276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-32323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-323859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.01891181IPR002487Transcription factor, K-box
PfamPF014862.8E-2594175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AELALIIFST RGKLYEFCST  60
SSMLKTLERY QKCNYGAPEN NASTKEALVL ELSSQQEYLK LKARYEALQR FQRNLMGEDL  120
GPLSSNELES LERQLDSSLK QIRSTRTQFM LDQLSDSQRK EHLLGEANTA LRQRLEEYQI  180
NQFQLNPSGE DMGYDRHPGQ HQGDALFQPL ECEPTLQMGY RPDPVSVITG GPSMNNYMAG  240
WLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A1e-44751751101Developmental protein SEPALLATA 3
4ox0_B1e-44751751101Developmental protein SEPALLATA 3
4ox0_C1e-44751751101Developmental protein SEPALLATA 3
4ox0_D1e-44751751101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000269|PubMed:9869431}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G263400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ8784240.0AJ878424.1 Glycine max mRNA for MADS transcription factor (mads28 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163779.11e-180hypothetical protein PHAVU_001G263400g
SwissprotO658741e-147MTF1_PEA; MADS-box transcription factor 1
TrEMBLV7D2611e-179V7D261_PHAVU; Uncharacterized protein
STRINGXP_007163779.11e-180(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.21e-121MIKC_MADS family protein
Publications ? help Back to Top
  1. Buchner P,Boutin JP
    A MADS box transcription factor of the AP1/AGL9 subfamily is also expressed in the seed coat of pea (Pisum sativum) during development.
    Plant Mol. Biol., 1998. 38(6): p. 1253-5
    [PMID:9869431]