PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G230500.1
Common NamePHAVU_001G230500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 597aa    MW: 64866.3 Da    PI: 5.0696
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G230500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4601.4e-1402265901374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         lv++L++cAeav++++l+la+al++++  la++++ +m+++a+yf++ALa+r+++        + p+et +++ s+ l++   f+e +P+l
  Phvul.001G230500.1 226 LVHTLMACAEAVQQENLKLADALVKHVGILAASQAGAMRKVATYFAQALARRIYG--------IFPEETLDSSLSDLLHM--HFYESCPYL 306
                         689****************************************************........44555555677888777..5******** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         kf+h+taNqaIlea++++ rvH+iDf+++qG+QWpaL+qaLa Rp+gpp++R+Tg+g+p+++++++l+++g++La++A+++gv+fef+ +v
  Phvul.001G230500.1 307 KFAHFTANQAILEAFATAGRVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNTDALQQVGWKLAQLAQTIGVQFEFRGFV 397
                         ******************************************************************************************* PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                         +++l+dl++++L+++pgEa+aVn+v++lhr+l++++s+++    v+++vk+l+Pk+v++veqea+hn++ Fl+rf+eal+yys+lfdsle 
  Phvul.001G230500.1 398 CSSLADLDPNMLEIRPGEAVAVNSVFELHRMLARPGSVDK----VMDTVKNLNPKIVTIVEQEANHNGPVFLDRFTEALHYYSSLFDSLEG 484
                         ********************************99999999....*********************************************99 PP

                GRAS 274 klpres....eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv 359
                         + +++     +++  +++++lg++i+nvva eg er+erhetl++Wr r+++aGF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+
  Phvul.001G230500.1 485 SSSSTGlgspSQDLLMSEVYLGKQICNVVAYEGVERVERHETLSQWRGRMGSAGFDPVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLM 575
                         866665677899******************************************************************************* PP

                GRAS 360 lgWkdrpLvsvSaWr 374
                         lgW++rpL+++SaW+
  Phvul.001G230500.1 576 LGWHTRPLIATSAWK 590
                         **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011297.3E-3441114No hitNo description
PfamPF120412.0E-3541108IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098569.338200569IPR005202Transcription factor GRAS
PfamPF035144.8E-138226590IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0090378Biological Processseed trichome elongation
GO:2000273Biological Processpositive regulation of receptor activity
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MKRDFQQACA GGPVKGDSSS MPNGKAKMWE EDRHQQGGGM DELLAALGYK VRASDMADVA  60
QKLEQLEMVM GSAQEEGISH LSSYTVHYDP TDLHSWVQSM LSELNPEPTT ILDPSSFLID  120
NPVHSSPILT TTSRVFNDDS EYDLRAIPGI AAYPPQHATN NATTISTTTA TSPTTTVATT  180
NTQTVEEIEP GTNKRLKASP IESSESASEP TRPVVLVDSQ EAGVRLVHTL MACAEAVQQE  240
NLKLADALVK HVGILAASQA GAMRKVATYF AQALARRIYG IFPEETLDSS LSDLLHMHFY  300
ESCPYLKFAH FTANQAILEA FATAGRVHVI DFGLKQGMQW PALMQALALR PGGPPTFRLT  360
GIGPPQPDNT DALQQVGWKL AQLAQTIGVQ FEFRGFVCSS LADLDPNMLE IRPGEAVAVN  420
SVFELHRMLA RPGSVDKVMD TVKNLNPKIV TIVEQEANHN GPVFLDRFTE ALHYYSSLFD  480
SLEGSSSSTG LGSPSQDLLM SEVYLGKQIC NVVAYEGVER VERHETLSQW RGRMGSAGFD  540
PVHLGSNAFK QASMLLALFA GGDGYRVEEN NGCLMLGWHT RPLIATSAWK LPSPES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-672105892377Protein SCARECROW
5b3h_D2e-672105892377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G230500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3044580.0AB304458.1 Phaseolus vulgaris PvGAI2 mRNA for DELLA protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163387.10.0hypothetical protein PHAVU_001G230500g
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLV7D2D10.0V7D2D1_PHAVU; Uncharacterized protein
STRINGXP_007163387.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.10.0RGA-like 2