PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G215100.1
Common NamePHAVU_001G215100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 254aa    MW: 28326.4 Da    PI: 6.0388
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G215100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-172572148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd  l d+++++G g+W+++ar+ g++Rt+k c++rw++yl
  Phvul.001G215100.1 25 KGPWTEEEDSVLSDYITLHGEGHWNSVARYTGLKRTGKGCRLRWLNYL 72
                        79********************************************97 PP
2Myb_DNA-binding48.22.5e-1578121146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T +E++ ++d++ ++G++ W++Ia++++ gRt++++k++w++
  Phvul.001G215100.1  78 RGNITLQEQLMILDLHSRWGNR-WSKIAEHLP-GRTDNEIKNYWRT 121
                         7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.9632076IPR017930Myb domain
SuperFamilySSF466896.36E-3022119IPR009057Homeodomain-like
SMARTSM007171.8E-122474IPR001005SANT/Myb domain
PfamPF002491.1E-142572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-212679IPR009057Homeodomain-like
CDDcd001675.83E-102772No hitNo description
PROSITE profilePS5129417.83677127IPR017930Myb domain
SMARTSM007172.1E-1377125IPR001005SANT/Myb domain
PfamPF002498.2E-1478121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2180125IPR009057Homeodomain-like
CDDcd001672.83E-1082121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MERSLSENGS SGTYGSSEEE MSITKGPWTE EEDSVLSDYI TLHGEGHWNS VARYTGLKRT  60
GKGCRLRWLN YLRPNVRRGN ITLQEQLMIL DLHSRWGNRW SKIAEHLPGR TDNEIKNYWR  120
TRVVKQAKQL KCDVNSKQFR DTLRFVWMPR MLERIQAQAS SSGQAQTTLT SKVQAQSDPC  180
GGATATASNP GLLSEASSAV DVHEASLSDS GASYSLMGCG SWSSYGAEEG YGGVDLWTDE  240
NIWFLQQQLA DDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-232311925120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G215100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0973791e-175BT097379.1 Soybean clone JCVI-FLGm-16I17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163206.10.0hypothetical protein PHAVU_001G215100g
SwissprotQ10MB41e-76MYB2_ORYSJ; Transcription factor MYB2
TrEMBLV7D1230.0V7D123_PHAVU; Uncharacterized protein
STRINGXP_007163206.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.19e-79myb domain protein 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]