PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G213400.1
Common NamePHAVU_001G213400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 556aa    MW: 63493.5 Da    PI: 5.25
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G213400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS262.31.7e-801845531374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsP 89 
                         lv+ Ll +Ae v  +++e+a++lL + + ++s +++p+qR++++f++AL++r+ r   ++ ++ + ++++  +  ++  +++  + ++  P
  Phvul.001G213400.1 184 LVQFLLGAAERVGCQQFERASKLLLHCQLNSSANASPVQRVIFHFAQALRERIDRGLGRMTAKGSEKNEEV-EliQKLDTKVALTCHKNIP 273
                         6789***************************************************4444444333333332.223333444445589999* PP

                GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                         + ++ ++t  qaI+e v++e+++H iD++   G++   L+qaL++R+  +   ++iT+++ ++   k ++eetg+rLa+fAe+l++pf++n
  Phvul.001G213400.1 274 FNQVMQFTGIQAIVEHVASETKIHLIDLESVSGVHDTVLMQALTERQdYKVQLFKITALALSS--YKAMIEETGKRLARFAESLNLPFSYN 362
                         ***********************************************7778899*******55..9************************* PP

                GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                         ++ ++++++++ +++++ ++E++aV + + l  +++++ ++e+    +++++++++P +++v e ea+hns+ F++rf+eal +ysa+fd+
  Phvul.001G213400.1 363 AVFVTDFAEIRKDDFEIGEDEVVAVYSPYFLRGMVSRPDCMEN----LMRVIWNIKPVIMIVLEVEANHNSPFFVNRFIEALFFYSAFFDC 449
                         ***********************************99998888....******************************************** PP

                GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvl 360
                         l + + +e+e r+k+E++ l++ i+++va+eg+er+ r+ +   Wr+ + +  + ++ +se+   qa+l+ ++++ ++  +v+++ ++l+ 
  Phvul.001G213400.1 450 LGSCMNHENECRMKIEAV-LSEGIRDIVAMEGRERKVRNVKIDVWRRFFARYRMVEIGFSESSLYQAHLVNKEFAfGKFCTVDKNGKCLLV 539
                         *****************9.********************************************************77878999999***** PP

                GRAS 361 gWkdrpLvsvSaWr 374
                         gWk+ pL s+SaWr
  Phvul.001G213400.1 540 GWKGTPLHSISAWR 553
                         *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.259158532IPR005202Transcription factor GRAS
PfamPF035145.9E-78184553IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MEIDQFSSTA LNLKEILVGY GSAQEDVFKG QESFSGMKLL GPIEDENGTK LLKDEDQKQL  60
QEPEVDELLE EFNCGHDMQE FNETTEPAKH DVESAEHNKQ VPPLLASLEL LRNYGSRFKR  120
LSEQNITKPS LDPHQISTEE IMRVAGARYV QYSAHWNDSF CIPMHPYGLD FGGLSEEENR  180
EVELVQFLLG AAERVGCQQF ERASKLLLHC QLNSSANASP VQRVIFHFAQ ALRERIDRGL  240
GRMTAKGSEK NEEVELIQKL DTKVALTCHK NIPFNQVMQF TGIQAIVEHV ASETKIHLID  300
LESVSGVHDT VLMQALTERQ DYKVQLFKIT ALALSSYKAM IEETGKRLAR FAESLNLPFS  360
YNAVFVTDFA EIRKDDFEIG EDEVVAVYSP YFLRGMVSRP DCMENLMRVI WNIKPVIMIV  420
LEVEANHNSP FFVNRFIEAL FFYSAFFDCL GSCMNHENEC RMKIEAVLSE GIRDIVAMEG  480
RERKVRNVKI DVWRRFFARY RMVEIGFSES SLYQAHLVNK EFAFGKFCTV DKNGKCLLVG  540
WKGTPLHSIS AWRFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-3119255227378Protein SCARECROW
5b3h_A2e-3119255226377Protein SCARECROW
5b3h_D2e-3119255226377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G213400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163182.10.0hypothetical protein PHAVU_001G213400g
TrEMBLV7D1W70.0V7D1W7_PHAVU; Uncharacterized protein
STRINGXP_007163182.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-46RGA-like 1