PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G174400.1
Common NamePHAVU_001G174400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family AP2
Protein Properties Length: 460aa    MW: 50414.7 Da    PI: 6.7036
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G174400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.7e-17125174155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Phvul.001G174400.1 125 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 174
                         78*******************......55************************997 PP
2AP241.72.9e-13217267155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Phvul.001G174400.1 217 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSELEAARAYDRAAIKCNG 267
                         89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-9125174IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-16125184IPR016177DNA-binding domain
SMARTSM003805.3E-33126188IPR001471AP2/ERF domain
PROSITE profilePS5103217.794126182IPR001471AP2/ERF domain
CDDcd000186.88E-12126184No hitNo description
Gene3DG3DSA:3.30.730.103.9E-17126183IPR001471AP2/ERF domain
PfamPF008474.0E-9217267IPR001471AP2/ERF domain
CDDcd000183.12E-26217277No hitNo description
SuperFamilySSF541717.19E-17217277IPR016177DNA-binding domain
PROSITE profilePS5103215.58218275IPR001471AP2/ERF domain
SMARTSM003806.4E-31218281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-15218275IPR001471AP2/ERF domain
PRINTSPR003675.2E-6219230IPR001471AP2/ERF domain
PRINTSPR003675.2E-6257277IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MLDLNLNADS PSDNNHTPPL SVAQMESSGS FSSSVVNAAD TDDSCSYGDT VAYNFAILNN  60
SASFSAGESS VRTIQLFPAT DSGVSPAWLD VSSKVDQHGV AAEQMITPRQ PQVKKSRRGP  120
RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVDADIN  180
FNVSDYDEDI KQMSNFTKEE FVHILRRQST GFSRGSSKYR GVTLHKCGRW EARMGQFLGK  240
KYIYLGLFDS ELEAARAYDR AAIKCNGREA VTNFEPSIYE GEVISQSDNE DGKQNLDLNL  300
GIAPPSYSDS QIKNTPSNGS GLKTPPCWDD SPVEKRFMFE HSGSRSLNVQ PSHGISRVSG  360
HHPSTWNGSN FFPIYEETAI EKKLEAGPMP SWAWQVQGPY GGASLTPPFS TAASSGFPST  420
IIPSAADTQI HFPNMTFLHS HFPPSITNSS TISPFFIGS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G174400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-169AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162717.10.0hypothetical protein PHAVU_001G174400g
SwissprotB8AMA91e-109AP22_ORYSI; APETALA2-like protein 2
TrEMBLV7D0N20.0V7D0N2_PHAVU; Uncharacterized protein
STRINGXP_007162717.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-107related to AP2.7