PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G132000.1
Common NamePHAVU_001G132000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family FAR1
Protein Properties Length: 654aa    MW: 75025 Da    PI: 7.0391
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G132000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.93.3e-1362137289
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                         +Y +YA+++GF+v++++sk+  r+g+++   +vCs+  k++ +            +++  C+a+++++++kdg+++v+ + l HnHel
  Phvul.001G132000.1  62 YYTRYANQMGFNVKTRTSKRG-REGKVKYLILVCSERTKTAIDA-----------SKKQYCTARINLTLRKDGTYRVSAVTLGHNHEL 137
                         8*************9999988.7778*********988887765...........45999***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-962137IPR004330FAR1 DNA binding domain
PfamPF105517.3E-24233326IPR018289MULE transposase domain
PROSITE profilePS5096610.447517555IPR007527Zinc finger, SWIM-type
PfamPF044343.5E-6529552IPR007527Zinc finger, SWIM-type
SMARTSM005753.8E-5530557IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MGERSHSDAQ LDTISSGTEE HLISRLPKEC KIGAITLDES DDVYPVPRPG MIFRSEPEAR  60
LYYTRYANQM GFNVKTRTSK RGREGKVKYL ILVCSERTKT AIDASKKQYC TARINLTLRK  120
DGTYRVSAVT LGHNHELGTP SVFPINIEMK CKRKMDPEVI DMGVNKISEQ DQKERHGIGE  180
NGDGDALQKY LVRMQEQDRN FFYAIDLDDL FSVKNVFWSD GRSRAAYESF GDVVTVDTSC  240
FSNHYKVPLV TFVGVNHHGQ SVLFGCGLLS SEDSQSFIWL FESLLHCMSG VPPQGIVTDH  300
CCRTMQKAVE TVYPSIPHRW CLSNIMGKLP EVIQEYANCK TLRDRVQNVV YDTPTTDEFE  360
EKWKKIVEDF DLKENKWLKE LSLERHRWAP SFVRGGFWAG MYINPQSGSR LTCFDGYINR  420
QTTLKQFVDQ YNNALQYKAE KEYIADIHSS SNSQTCVTSS SIERQFQSAY THAKFVEVQR  480
EFVGKADCNV FVAFEDGSIC HYNVIEDMIT EDKPKESLVE VIYNREDCDL KCSCHFFEFR  540
GLLCRHSLAV LSQERVKEVP CKYILDRWRK NVQRKHVYVK TSYGVEHFGP QVQRFDLLCN  600
QFNSIAAAAA EFEGTSSFVK DTLCNLKEKL EPWTSLLRNS SHVDVQKHSN MIN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G132000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162193.10.0hypothetical protein PHAVU_001G132000g
TrEMBLV7CVJ40.0V7CVJ4_PHAVU; Uncharacterized protein
STRINGXP_007162193.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.13e-96FAR1-related sequence 6