PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G131000.1
Common NamePHAVU_001G131000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 233aa    MW: 26586 Da    PI: 9.3857
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G131000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.11.3e-33221132102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+y ++ed++++ ++sw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF ++ Fkkg++e
  Phvul.001G131000.1  22 FLLKTYMLVEDPATDAVVSWNADGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFFNDRFKKGERE 103
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         +l +i+r+k 
  Phvul.001G131000.1 104 QLYEIRRRKA 113
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.0E-3516105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-5018111IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-3118111IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.6E-182245IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.6E-3022111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-186072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-187385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEASSDKGLL LECGRKCSPP PFLLKTYMLV EDPATDAVVS WNADGTAFVV WQPAEFARDL  60
LPTLFKHSNF SSFVRQLNTY GFRKVATSRW EFFNDRFKKG EREQLYEIRR RKAWTNKQQP  120
NVPNQGTPQD SDEDQRSSST SSSSGYTTLV DENKRLKKEN GVLNSELRSM KRKCKELLDS  180
VAKYSSDAKE KEEDERPMLF GVRLDVEGGR EMKRNRAKIS ESASIMLSQS CK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-202011127129Heat shock factor protein 1
5d5v_B3e-202011127129Heat shock factor protein 1
5d5v_D3e-202011127129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G131000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0987910.0BT098791.1 Soybean clone JCVI-FLGm-16B16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162180.11e-172hypothetical protein PHAVU_001G131000g
SwissprotO222308e-68HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLV7CVP71e-171V7CVP7_PHAVU; Uncharacterized protein
STRINGXP_007162180.11e-172(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.12e-65heat shock transcription factor B3