PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.001G064600.1 | ||||||||
Common Name | PHAVU_001G064600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MYB | ||||||||
Protein Properties | Length: 247aa MW: 27025.7 Da PI: 7.8214 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.5 | 3.5e-19 | 18 | 62 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W ++Ed++l+++v+q+G+ +W++Ia+++ gRt+k+c++rw+++l Phvul.001G064600.1 18 HWKEDEDQKLIQLVQQHGPQHWNAIAQHIH-GRTGKSCRLRWRNHL 62 6*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 46.9 | 6.5e-15 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++++eE+e+l+ a + +G++ W+tIa+ + gRt++ +k++w+ + Phvul.001G064600.1 68 RNPFSKEEEERLIAAREFYGSK-WATIAKLFF-GRTDNALKNHWHVL 112 789*******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.503 | 11 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.7E-29 | 14 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-16 | 15 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-26 | 18 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.86E-16 | 19 | 62 | No hit | No description |
Pfam | PF13921 | 9.5E-21 | 19 | 79 | No hit | No description |
PROSITE profile | PS51294 | 15.796 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.50E-10 | 70 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.9E-17 | 71 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MDNSTAASEN LPHHRANHWK EDEDQKLIQL VQQHGPQHWN AIAQHIHGRT GKSCRLRWRN 60 HLSPEVNRNP FSKEEEERLI AAREFYGSKW ATIAKLFFGR TDNALKNHWH VLTARKRKEA 120 NNGSLQELVN ASSSSSPCNI PRPHHNAFFH MRNFNAAQTA PAPVCSSASF SPANFGSVPS 180 FSESFPAAAA AAAAGGGGMM KKGLFHGSSS AEFEGSSSSE KNQAHDAGFK DATFYDFLGV 240 GADDDE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-32 | 19 | 116 | 7 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-32 | 19 | 116 | 7 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.001G064600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 4e-91 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007161388.1 | 0.0 | hypothetical protein PHAVU_001G064600g | ||||
TrEMBL | V7CT69 | 0.0 | V7CT69_PHAVU; Uncharacterized protein | ||||
STRING | XP_007161388.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20205 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G29020.1 | 6e-45 | myb domain protein 110 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.001G064600.1 |
Entrez Gene | 18640572 |