PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G042200.1
Common NamePHAVU_001G042200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 281aa    MW: 31274.2 Da    PI: 8.3826
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G042200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.7e-30133190258
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                          Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs edp+++++tYegeHnh
  Phvul.001G042200.1 133 MDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQRSLEDPTILVTTYEGEHNH 190
                         6***************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-29124191IPR003657WRKY domain
PROSITE profilePS5081125.453127193IPR003657WRKY domain
SuperFamilySSF1182907.19E-25130191IPR003657WRKY domain
SMARTSM007743.0E-34132192IPR003657WRKY domain
PfamPF031061.8E-24134190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0002238Biological Processresponse to molecule of fungal origin
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009623Biological Processresponse to parasitic fungus
GO:0009651Biological Processresponse to salt stress
GO:0009685Biological Processgibberellin metabolic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEPTCLDTSL NLNVDPSSVH MDGVLVEELR RLSGENKRLT EMLTQLCDNY MVLQKQLTQL  60
INTNFEQDQL ESRKRKAESE CCTNRFGVVN NNNGECSSIT EDSFKRYKDF NSSPKVSKVL  120
VKTEASNNSL YVMDGYQWRK YGQKVTRDNP SPRAYFKCSF APSCPVKKKV QRSLEDPTIL  180
VTTYEGEHNH GNQRGEISVG SKQSEGTKGS SPVSSPTHTI RSACPTVTLD LVKSGLVESA  240
QKSSIQQFLV QQMATSLTRD PNFTTALATA ISGKILEPKW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-201341901974Probable WRKY transcription factor 4
2lex_A2e-201341901974Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G042200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-120AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161095.10.0hypothetical protein PHAVU_001G042200g
TrEMBLV7CSH50.0V7CSH5_PHAVU; Uncharacterized protein
STRINGXP_007161095.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.15e-76WRKY DNA-binding protein 40