PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.001G042100.3 | ||||||||
Common Name | PHAVU_001G042100g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | WRKY | ||||||||
Protein Properties | Length: 235aa MW: 26473 Da PI: 8.456 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89 | 3.9e-28 | 72 | 130 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 ++Dgy+WrKYGqK+ k++ pr+Y+rC++a Cp+kkkv+r+ +d+++++ tY geHnh Phvul.001G042100.3 72 VKDGYQWRKYGQKVTKDNASPRAYFRCSMApICPAKKKVQRCLHDKSILVATYDGEHNH 130 58***************************99**************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.72 | 67 | 133 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.4E-28 | 67 | 131 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-24 | 68 | 131 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.1E-32 | 72 | 132 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-23 | 73 | 130 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MLEVLSSKYT VLKSHLQEIN KEQHKGMSSN QRGSVTEPIT DANKRRRLEF PTAKKPLQIF 60 VRTLPTDDSL IVKDGYQWRK YGQKVTKDNA SPRAYFRCSM APICPAKKKV QRCLHDKSIL 120 VATYDGEHNH GALHESSSST PRGSSVAKQL PSMANDKEAM DILALSRWSQ TDSRHIEEVM 180 HQDNYGSNIK VEEYVSSLIK DPEFTMSLAE AVARSITGEI KQQDLDLNLN IPEE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-19 | 71 | 130 | 13 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 43 | 47 | KRRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.001G042100.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU375349 | 1e-175 | EU375349.1 Glycine max transcription factor (WRKY63) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007161093.1 | 1e-177 | hypothetical protein PHAVU_001G042100g | ||||
TrEMBL | V7CSB8 | 1e-176 | V7CSB8_PHAVU; Uncharacterized protein | ||||
STRING | XP_007161093.1 | 1e-177 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 5e-41 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.001G042100.3 |
Entrez Gene | 18640335 |