PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.001G026700.1 | ||||||||
Common Name | PHAVU_001G026700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 221aa MW: 23972.9 Da PI: 8.6133 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H Phvul.001G026700.1 71 YKCSVCHKTFPSYQALGGHKASH 93 9***********99999998887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.7E-14 | 70 | 95 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.09E-7 | 70 | 143 | No hit | No description |
SMART | SM00355 | 0.0045 | 71 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.556 | 71 | 93 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.4E-13 | 120 | 145 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 121 | 143 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.432 | 121 | 148 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 123 | 143 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence Send to blast |
MALEALNSPT TTVPSFPFDH PTIPWAKRKR SKRSRDHPSE EEYLALCLIM LARGTTTTTT 60 PTPDPSSKLT YKCSVCHKTF PSYQALGGHK ASHRKLALAD DHPTSSAATS TSIATASGRA 120 HECSICHKSF PTGQALGGHK RCHYEGNNNN NNNNGNSTSV VTASEGVGST HSHHRDFDLN 180 IPAFPDLTTK PGEDEVESPH PVMKKPRLFV VPKIEIPHFL * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional repressor involved in abiotic stress responses. Can repress the stress responsive genes DREB1A and LTI78. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. {ECO:0000269|PubMed:12032082, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20140232, ECO:0000269|PubMed:8662738}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.001G026700.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salt, cold and drought stresses. Down-regulated by gibberellin. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:11351099, ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:8662738}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FJ172776 | 1e-69 | FJ172776.1 Glycine soja putative Cys2-His2 type zinc finger protein gene, complete cds. | |||
GenBank | JQ743889 | 1e-69 | JQ743889.1 Glycine max C2H2-type zinc finger protein (STF-3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007160903.1 | 1e-163 | hypothetical protein PHAVU_001G026700g | ||||
Swissprot | Q96289 | 3e-62 | ZAT10_ARATH; Zinc finger protein ZAT10 | ||||
TrEMBL | V7CRT3 | 1e-161 | V7CRT3_PHAVU; Uncharacterized protein | ||||
STRING | XP_007160903.1 | 1e-162 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1327 | 32 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G27730.1 | 7e-56 | salt tolerance zinc finger |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.001G026700.1 |
Entrez Gene | 18640179 |