PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G025200.1
Common NamePHAVU_001G025200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 277aa    MW: 29884.9 Da    PI: 9.9142
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G025200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.8e-181257147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+W++eEde l ++v+ lG+++W+ I++ ++ gR++k+c++rw + 
  Phvul.001G025200.1 12 KGPWSPEEDEALQRLVQALGPRNWTVISKSIP-GRSGKSCRLRWCNQ 57
                        79******************************.***********985 PP
2Myb_DNA-binding52.98.2e-1766108347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++++eEd+ +v+a+ ++G++ W+tIar ++ gRt++ +k++w++ 
  Phvul.001G025200.1  66 PFSPEEDDAIVRAHGRFGNK-WATIARLLN-GRTDNAVKNHWNST 108
                         89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.185762IPR017930Myb domain
SuperFamilySSF466893.74E-319105IPR009057Homeodomain-like
SMARTSM007171.2E-151160IPR001005SANT/Myb domain
PfamPF002491.1E-171257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-241365IPR009057Homeodomain-like
CDDcd001673.96E-151456No hitNo description
SMARTSM007173.6E-1463111IPR001005SANT/Myb domain
PROSITE profilePS5129420.33764113IPR017930Myb domain
CDDcd001671.52E-1166109No hitNo description
Gene3DG3DSA:1.10.10.603.2E-2266112IPR009057Homeodomain-like
PfamPF002494.9E-1466108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MASGSRDMDR VKGPWSPEED EALQRLVQAL GPRNWTVISK SIPGRSGKSC RLRWCNQLSP  60
EVEHRPFSPE EDDAIVRAHG RFGNKWATIA RLLNGRTDNA VKNHWNSTLK RKCSAVSLDV  120
TDRPPLKRSA SVGAGYLNPS SPSGSELSDP GQPALSTPSA SARCRPNLME TASSPSDPAT  180
SLSLCLPGFG SEPSLVAAPR PASSPPPVSP PPPPPAAVEE RGKQLFNAEF LRVMQEMIRK  240
EVRSYMSGME LKNGLRIQTE AIGNAVVKRM GISNIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-40111133105MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-40111133105C-Myb DNA-Binding Domain
1msf_C4e-40111133105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G025200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160886.10.0hypothetical protein PHAVU_001G025200g
SwissprotO231608e-82MYB73_ARATH; Transcription factor MYB73
TrEMBLV7CUC30.0V7CUC3_PHAVU; Uncharacterized protein
STRINGXP_007160886.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-81myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]