PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.001G019200.1 | ||||||||
Common Name | PHAVU_001G019200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MYB | ||||||||
Protein Properties | Length: 182aa MW: 20280.7 Da PI: 10.4756 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.3 | 1.1e-15 | 38 | 83 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W eEd l +v+ +G+++W++I+r++ gR++k+c++rw + Phvul.001G019200.1 38 KGAWGVEEDRVLTGLVEAHGPRNWALISRHVK-GRSGKSCRLRWCNQ 83 799****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 46.9 | 6.5e-15 | 92 | 132 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++Tt E +++a+ +lG++ W+tIar+++ gRt++ +k++w+ Phvul.001G019200.1 92 PFTTRENAVILHAHDRLGNK-WATIARMLP-GRTDNAVKNHWN 132 89******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.568 | 33 | 88 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.86E-29 | 36 | 131 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-13 | 37 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-15 | 38 | 83 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-21 | 39 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.55E-11 | 40 | 82 | No hit | No description |
SMART | SM00717 | 7.8E-11 | 89 | 137 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 15.12 | 90 | 139 | IPR017930 | Myb domain |
CDD | cd00167 | 6.12E-8 | 92 | 135 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-19 | 92 | 137 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-11 | 92 | 132 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
IMKMRGTKQC SSSSSHSSTS EFNPSNNDHN NNTCVRKKGA WGVEEDRVLT GLVEAHGPRN 60 WALISRHVKG RSGKSCRLRW CNQLSPAVEH RPFTTRENAV ILHAHDRLGN KWATIARMLP 120 GRTDNAVKNH WNATLKRVPS QRCRFGDEPG CGGSTAGFRE VRECVSYSFS DNFGSNKELP 180 F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-37 | 38 | 137 | 4 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-36 | 38 | 137 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-36 | 38 | 137 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-37 | 38 | 137 | 4 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 3e-37 | 38 | 137 | 4 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.001G019200.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007160819.1 | 1e-133 | hypothetical protein PHAVU_001G019200g, partial | ||||
Swissprot | O23160 | 1e-48 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | V7CTV8 | 1e-132 | V7CTV8_PHAVU; Uncharacterized protein (Fragment) | ||||
STRING | XP_007160819.1 | 1e-133 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5074 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 9e-51 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.001G019200.1 |
Entrez Gene | 18640104 |
Publications ? help Back to Top | |||
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