PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G018400.1
Common NamePHAVU_001G018400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 472aa    MW: 52576.9 Da    PI: 8.1776
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G018400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.62.7e-19481261498
                         T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         + l lpk+f ++    k+ +  +tl+ +sg  W+v +    ++++ +l+ GW +Fvk++ Lke+Df+vFk++g+s+f   v vf+
  Phvul.001G018400.1  48 QHLALPKTFSDNLR--KKLPENVTLKGPSGVAWKVAM--IARGDTLYLAHGWGQFVKDHCLKENDFLVFKYNGESQF--DVLVFD 126
                         4489*****85555..447789***************..888889****************************9999..777776 PP
2B343.17.8e-14348435494
                         E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                  B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                         v+ ps+v k+  +++p+k + eh ++   s++++l+  +  +W  +++y + + +  +t+GWk+Fv +n+L+e D++vFk  g++++++v+
  Phvul.001G018400.1 348 VMRPSHVYKRFFVSMPNKWIGEHISP--MSQDVILRMGK-GEWIARYSYHNIRHTGGFTGGWKHFVLDNNLEEYDVCVFKPAGQMNETMVI 435
                         789********************655..55689988855.58*******777777789**********************99988887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.39E-2233126IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.45335128IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-2237126IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.9E-1838128IPR003340B3 DNA binding domain
PfamPF023628.3E-1648124IPR003340B3 DNA binding domain
CDDcd100173.69E-1950126No hitNo description
Gene3DG3DSA:2.40.330.105.0E-17344436IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.925345443IPR003340B3 DNA binding domain
CDDcd100173.43E-15345441No hitNo description
SMARTSM010195.1E-8345443IPR003340B3 DNA binding domain
SuperFamilySSF1019369.81E-16346433IPR015300DNA-binding pseudobarrel domain
PfamPF023624.4E-12347435IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
IATFSSFSVV LPMGVQNCNG CRSWEDDIYW SHFQFLHFMQ FLRAEYDQHL ALPKTFSDNL  60
RKKLPENVTL KGPSGVAWKV AMIARGDTLY LAHGWGQFVK DHCLKENDFL VFKYNGESQF  120
DVLVFDGGNL CEKACSYFVR KCGHTEGEHV GGSLNRRRDT TEGCVEEGHT PSNAGVKCAS  180
PERSVHANGS KEPINVPFET PTRSEEALNA DVESGGAEQV RSVGIPLSAV PTETANGKRI  240
RKLVSAVKHV QTKRRGRPAK VSHVMERAKI DLCALNSTSD NLAVIACVGF FSVCFKLKWV  300
ESGEPVSAVK SGSYELFISN RRPVTEDEIK NAFALAQAER TEDGLVIVMR PSHVYKRFFV  360
SMPNKWIGEH ISPMSQDVIL RMGKGEWIAR YSYHNIRHTG GFTGGWKHFV LDNNLEEYDV  420
CVFKPAGQMN ETMVIDMAIF RVVQETVPLS VMSPSGKRAR KSAQNANLTE T*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G018400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160808.10.0hypothetical protein PHAVU_001G018400g, partial
TrEMBLV7CRJ00.0V7CRJ0_PHAVU; Uncharacterized protein (Fragment)
STRINGXP_007160808.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-46B3 family protein