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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Phvul.001G008200.1 | ||||||||
| Common Name | PHAVU_001G008200g | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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| Family | ARF | ||||||||
| Protein Properties | Length: 938aa MW: 104047 Da PI: 5.8265 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 75.5 | 6.3e-24 | 159 | 260 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
f+k+lt sd++++g +++p++ ae+ +++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F
Phvul.001G008200.1 159 FCKTLTASDTSTHGGFSVPRRAAEKLfppldyTIQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI-- 246
99*********************999*****9555555.49************************************************.. PP
SSSEE..EEEEE-S CS
B3 86 grsefelvvkvfrk 99
++++ +l+v+v+r
Phvul.001G008200.1 247 RDEKSQLRVGVRRV 260
4577778****985 PP
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| 2 | Auxin_resp | 114.6 | 8.7e-38 | 285 | 368 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
aahaa+++s+F+++YnPra++seFv++++k++ka+ ++vsvGmRf m+fete+s +rr++Gt+vg+sd+dp+rWp+SkWr+++
Phvul.001G008200.1 285 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKAVLgTQVSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQ 368
79********************************988********************************************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 8.37E-47 | 147 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 4.0E-41 | 152 | 273 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 5.91E-23 | 158 | 259 | No hit | No description |
| SMART | SM01019 | 8.5E-25 | 159 | 261 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 12.872 | 159 | 261 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 2.5E-21 | 159 | 260 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 6.7E-33 | 285 | 368 | IPR010525 | Auxin response factor |
| Pfam | PF02309 | 9.3E-11 | 829 | 918 | IPR033389 | AUX/IAA domain |
| PROSITE profile | PS51745 | 23.746 | 831 | 915 | IPR000270 | PB1 domain |
| SuperFamily | SSF54277 | 4.61E-8 | 833 | 910 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
| GO:0009908 | Biological Process | flower development | ||||
| GO:0009942 | Biological Process | longitudinal axis specification | ||||
| GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
| GO:0048364 | Biological Process | root development | ||||
| GO:0048507 | Biological Process | meristem development | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0016020 | Cellular Component | membrane | ||||
| GO:0042802 | Molecular Function | identical protein binding | ||||
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 938 aa Download sequence Send to blast |
MMASVEEKVK TGGVGVGAGA GAGGGMVVGG QTLVAEMKLL KEMQEHSGVR KNLNSELWHA 60 CAGPLVSLPQ VGSLVFYFPQ GHSEQVAAST RRTATSQIPN YPNLPSQLLC QVQNVTLHAD 120 KETDEIYAQM SLQPLNSERE AFPISDFGLK HSKHPTEFFC KTLTASDTST HGGFSVPRRA 180 AEKLFPPLDY TIQPPTQELV VRDLHDNTWT FRHIYRGQPK RHLLTTGWSL FVGSKRLRAG 240 DSVLFIRDEK SQLRVGVRRV NRQQTTLPSS VLSADSMHIG VLAAAAHAAA NRSPFTIFYN 300 PRACPSEFVI PLAKYRKAVL GTQVSVGMRF GMMFETEESG KRRYMGTIVG ISDVDPLRWP 360 GSKWRNIQVE WDEPGCVDKQ NRVSVWEIET PESLFIFPSL TSSLKRPLQS GFYENEWGTL 420 LRRPFMRAPD NGTMELSNSM PNLYSDHLMK MLFKPQVINN NGALLSAMQQ ESAATRSPFQ 480 EMKTALAVEN MPLRNLHTQS IPDQHNPLNM QSLLRNDQPE KLHTLAKIEL PSGMVTDKPK 540 LEPEVLPDHM LDYPSMEGSN IEKMATNPVN QQGLANQLTF HNQNQTPLTQ SSPWPMQPQL 600 ESSMPHPQMI DMTQAETAMV NGLLPQLDID EWMAYASSQP IAMPNRPTGP LSELQEHTSL 660 QPQVVNHNHP LPNHEVWDHY VKSLKFLSQT DQLTSICQPG TYGLNGMPSP NSLRDLSAES 720 NNQSEICVNV DVSNSVGTTV VDPSTSSTIL DEFCAMKERE FQNPNDCMVG NLSSSQDVQS 780 QITSASLAES HAFSLRDIPD NSGGTSSSHV DFDESSFLQN NSWQQVPAPI RTYTKVQKAG 840 SVGRSIDVTT FKNYEELIRA IECMFGLDGL LNDTKGSGWK LVYVDYESDV LLVGDDPWEE 900 FVGCVRCIRI LSPSEVQQMS EEGMKLLNSG ALQGMNV* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldu_A | 0.0 | 1 | 393 | 1 | 392 | Auxin response factor 5 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. | |||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00153 | DAP | Transfer from AT1G19850 | Download |
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| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Phvul.001G008200.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_007160683.1 | 0.0 | hypothetical protein PHAVU_001G008200g | ||||
| Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
| TrEMBL | V7CR69 | 0.0 | V7CR69_PHAVU; Auxin response factor | ||||
| STRING | XP_007160683.1 | 0.0 | (Phaseolus vulgaris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF8991 | 32 | 41 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G19850.1 | 0.0 | ARF family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Phvul.001G008200.1 |
| Entrez Gene | 18639992 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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