PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J608300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 228aa    MW: 23308.3 Da    PI: 9.3685
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J608300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.3e-202778156
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       ++++GVr ++ +gr++AeIrdp    k+ r +lg+f+taeeAa+a++aa+++++g+
  Pavir.J608300.1.p 27 PHFRGVRKRP-WGRFAAEIRDPA---KKSRLWLGTFDTAEEAARAYDAAAREYRGA 78
                       689*******.**********83...36**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.9E-142777IPR001471AP2/ERF domain
CDDcd000183.94E-182786No hitNo description
SMARTSM003801.4E-362891IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-222886IPR016177DNA-binding domain
PROSITE profilePS5103223.9072885IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-322885IPR001471AP2/ERF domain
PRINTSPR003679.8E-112940IPR001471AP2/ERF domain
PRINTSPR003679.8E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAPRTSEKTM APAAAPGLAL GVGGGGPHFR GVRKRPWGRF AAEIRDPAKK SRLWLGTFDT  60
AEEAARAYDA AAREYRGAKA KTNFPYPSSA SVPPAATAGS RSGGSSTVES FGGDVQAPMQ  120
AMPLPPSLEL DLFHRAAAAG AGAGVRFPFS GYPVTHPYYI FSQAAAGCHM QLKLPPTVTV  180
AAVAQSDSDS SSVVDLSPPP LAAAVSAKKA SAFDLDLNSP PPAEAEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-222685363ATERF1
3gcc_A6e-222685363ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.41371e-113callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J608300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807617.11e-91ethylene-responsive transcription factor 8-like
TrEMBLA0A3L6R5121e-105A0A3L6R512_PANMI; Ethylene-responsive transcription factor 4
STRINGPavir.J14354.1.p1e-160(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-18erf domain protein 9